Strain identifier
BacDive ID: 16636
Type strain: 
Species: Succinimonas amylolytica
Strain history: <- VPI, 13846
NCBI tax ID(s): 1265507 (strain), 83769 (species)
version 8.1 (current version)
General
@ref: 1155
BacDive-ID: 16636
DSM-Number: 2873
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Succinimonas amylolytica DSM 2873 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from rumen of cow.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 83769 | species |
| 1265507 | strain |
strain history
- @ref: 1155
- history: <- VPI, 13846
doi: 10.13145/bacdive16636.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Succinivibrionaceae
- genus: Succinimonas
- species: Succinimonas amylolytica
- full scientific name: Succinimonas amylolytica Bryant et al. 1958 (Approved Lists 1980)
@ref: 1155
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Succinivibrionaceae
genus: Succinimonas
species: Succinimonas amylolytica
full scientific name: Succinimonas amylolytica Bryant et al. 1958
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 1155
- name: RUMEN BACTERIA MEDIUM (DSMZ Medium 330)
- growth: yes
- link: https://mediadive.dsmz.de/medium/330
- composition: Name: RUMEN BACTERIA MEDIUM (DSMZ Medium 330) Composition: Na2CO3 4.0 g/l Trypticase peptone 2.0 g/l D-Glucose 0.5 g/l Yeast extract 0.5 g/l Maltose 0.5 g/l Cellobiose 0.5 g/l Starch 0.5 g/l Glycerol 0.5 g/l NaCl 0.456 g/l K2HPO4 0.3 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l (NH4)2SO4 0.228 g/l KH2PO4 0.228 g/l MgSO4 x 7 H2O 0.095 g/l CaCl2 x 2 H2O 0.0608 g/l Hemin 0.001 g/l Sodium resazurin 0.0005 g/l NaOH None Distilled water
culture temp
- @ref: 1155
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 1155 | anaerobe | |
| 69480 | anaerobe | 98.647 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.979
Isolation, sampling and environmental information
isolation
- @ref: 1155
- sample type: rumen of cow
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
taxonmaps
- @ref: 69479
- File name: preview.99_2852.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17027;96_1512;97_1804;98_2207;99_2852&stattab=map
- Last taxonomy: Succinimonas amylolytica subclade
- 16S sequence: Y17599
- Sequence Identity:
- Total samples: 5562
- soil counts: 106
- aquatic counts: 51
- animal counts: 5186
- plant counts: 219
Safety information
risk assessment
- @ref: 1155
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1155
- description: Succinimonas amylolytica 16S rRNA gene, partial
- accession: Y17599
- length: 1462
- database: ena
- NCBI tax ID: 83769
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Succinimonas amylolytica DSM 2873 | GCA_000378405 | scaffold | ncbi | 1265507 |
| 66792 | Succinimonas amylolytica DSM 2873 | 1265507.3 | wgs | patric | 1265507 |
| 66792 | Succinimonas amylolytica DSM 2873 | 2522125086 | draft | img | 1265507 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 89 | no |
| motile | yes | 78.77 | no |
| flagellated | no | 69.51 | no |
| gram-positive | no | 96.839 | no |
| anaerobic | yes | 96.994 | yes |
| aerobic | no | 96.789 | no |
| halophile | no | 76.479 | no |
| spore-forming | no | 97.02 | no |
| thermophile | no | 96.056 | yes |
| glucose-util | yes | 66.692 | no |
| glucose-ferment | yes | 58.357 | no |
External links
@ref: 1155
culture collection no.: DSM 2873, ATCC 19206, ATCC 29987, VPI 13846
straininfo link
- @ref: 85657
- straininfo: 92948
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1155 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2873) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2873 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 85657 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92948.1 | StrainInfo: A central database for resolving microbial strain identifiers |