Strain identifier
BacDive ID: 165980
Type strain: 
Species: Xylanibacter ruminicola
Strain history: F. Yoshimura <-- ATCC 19189 <-- W. E. C. Moore <-- K. Pittman <-- J. Bryant and L. A. Burkey 23.
NCBI tax ID(s): 839 (species)
General
@ref: 67770
BacDive-ID: 165980
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Xylanibacter ruminicola JCM 8958 is a mesophilic bacterium that was isolated from Rumen.
NCBI tax id
- NCBI tax id: 839
- Matching level: species
strain history
- @ref: 67770
- history: F. Yoshimura <-- ATCC 19189 <-- W. E. C. Moore <-- K. Pittman <-- J. Bryant and L. A. Burkey 23.
doi: 10.13145/bacdive165980.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prevotellaceae
- genus: Xylanibacter
- species: Xylanibacter ruminicola
- full scientific name: Xylanibacter ruminicola (Bryant et al. 1958) Hitch et al. 2023
synonyms
@ref synonym 20215 Bacteroides ruminicola 20215 Prevotella ruminicola
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Prevotella
species: Prevotella ruminicola
full scientific name: Prevotella ruminicola (Bryant et al. 1958) Shah and Collins 1990
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Rumen
Sequence information
16S sequences
- @ref: 67770
- description: Prevotella ruminicola strain ATCC 19189 16S ribosomal RNA gene, partial sequence
- accession: L16482
- length: 1473
- database: ena
- NCBI tax ID: 839
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Prevotella ruminicola ATCC 19189 | GCA_900108375 | scaffold | ncbi | 839 |
| 66792 | Prevotella ruminicola strain ATCC 19189 | 839.6 | wgs | patric | 839 |
| 66792 | Prevotella ruminicola ATCC 19189 | 2596583684 | draft | img | 839 |
GC content
- @ref: 67770
- GC-content: 49.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| glucose-ferment | yes | 70.451 | no |
| motile | no | 91.814 | no |
| flagellated | no | 97.735 | no |
| gram-positive | no | 96.184 | no |
| anaerobic | yes | 99.039 | no |
| aerobic | no | 97.197 | no |
| halophile | no | 91.78 | no |
| spore-forming | no | 91.128 | no |
| thermophile | no | 96.579 | no |
| glucose-util | yes | 88.71 | no |
External links
@ref: 67770
culture collection no.: JCM 8958, ATCC 19189
straininfo link
- @ref: 114684
- straininfo: 36893
literature
- topic: Biotechnology
- Pubmed-ID: 16701546
- title: Optimal protease production condition for Prevotella ruminicola 23 and characterization of its extracellular crude protease.
- authors: Wang HT, Hsu JT
- journal: Anaerobe
- DOI: 10.1016/j.anaerobe.2004.10.007
- year: 2004
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 114684 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID36893.1 |