Strain identifier
BacDive ID: 165965
Type strain: 
Species: Enterococcus faecalis
Strain history: NCTC 12201 <-- A. H. C. Uttley No. 1.
NCBI tax ID(s): 1351 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 165965
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Enterococcus faecalis JCM 8902 is a Gram-positive bacterium that was isolated from Arterio-venous shunt site.
NCBI tax id
- NCBI tax id: 1351
- Matching level: species
strain history
- @ref: 67770
- history: NCTC 12201 <-- A. H. C. Uttley No. 1.
doi: 10.13145/bacdive165965.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Enterococcus
- species: Enterococcus faecalis
- full scientific name: Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-Bälz 1984
synonyms
- @ref: 20215
- synonym: Streptococcus faecalis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Enterococcus
species: Enterococcus faecalis
full scientific name: Enterococcus faecalis (Andrewes and Horder 1906) Schleifer and Kilpper-B„lz 1984
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Arterio-venous shunt site
taxonmaps
- @ref: 69479
- File name: preview.99_24.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_19;97_20;98_23;99_24&stattab=map
- Last taxonomy: Enterococcus
- 16S sequence: AB690251
- Sequence Identity:
- Total samples: 76755
- soil counts: 1959
- aquatic counts: 3204
- animal counts: 70438
- plant counts: 1154
Sequence information
16S sequences
- @ref: 67770
- description: Enterococcus faecalis gene for 16S rRNA, partial sequence, strain: JCM 8902
- accession: AB690251
- length: 1500
- database: nuccore
- NCBI tax ID: 1351
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Enterococcus faecalis NCTC12201 | GCA_900447835 | contig | ncbi | 1351 |
| 66792 | Enterococcus faecalis strain NCTC12201 | 1351.1226 | wgs | patric | 1351 |
| 66792 | Enterococcus faecalis strain NCTC12201 | 1351.3964 | wgs | patric | 1351 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.091 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 84.886 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 74.52 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 93.392 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 86 | no |
External links
@ref: 67770
culture collection no.: JCM 8902, NCTC 12201
straininfo link
- @ref: 114679
- straininfo: 115031
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 1505742 | Co-transfer of vancomycin and other resistance genes from Enterococcus faecalis NCTC 12201 to Staphylococcus aureus. | Noble WC, Virani Z, Cree RG | FEMS Microbiol Lett | 10.1016/0378-1097(92)90528-v | 1992 | *Conjugation, Genetic, Drug Resistance, Microbial/genetics, Enterococcus faecalis/drug effects/*genetics, *Genes, Bacterial, Staphylococcus aureus/drug effects/*genetics, Vancomycin/*pharmacology | |
| Pathogenicity | 8957577 | In vitro and in vivo antibacterial activities of TOC-50, a new parenteral cephalosporin, against Enterococcus faecalis. | Nomura S, Hanaki H, Furukawa T, Unemi N | Chemotherapy | 10.1159/000239476 | 1996 | Animals, Anti-Bacterial Agents/*pharmacology, Cephalosporins/*pharmacology, Drug Evaluation, Preclinical, Enterococcus faecalis/*drug effects, Imipenem/pharmacology, Injections, Subcutaneous, Male, Mice, Mice, Inbred Strains, Microbial Sensitivity Tests, Molecular Structure, Vancomycin/pharmacology | |
| Pathogenicity | 25157467 | Structures of new phenolics isolated from licorice, and the effectiveness of licorice phenolics on vancomycin-resistant Enterococci. | Eerdunbayaer, Orabi MA, Aoyama H, Kuroda T, Hatano T | Molecules | 10.3390/molecules190913027 | 2014 | Anti-Bacterial Agents/pharmacology, Glycyrrhiza/*chemistry, Humans, Hydroxybenzoates/administration & dosage/*chemistry, Isoflavones/chemistry, Medicine, Traditional, Microbial Sensitivity Tests, Phenols/*chemistry, Plant Extracts/*chemistry, Vancomycin/pharmacology, Vancomycin-Resistant Enterococci/drug effects | Phylogeny |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 114679 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID115031.1 |