Strain identifier
BacDive ID: 165787
Type strain: 
Species: Lactiplantibacillus plantarum subsp. plantarum
Strain history: S. Tanasupawat F7-1.
NCBI tax ID(s): 337330 (subspecies)
General
@ref: 67770
BacDive-ID: 165787
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Lactiplantibacillus plantarum subsp. plantarum JCM 8341 is a mesophilic, Gram-positive bacterium that was isolated from Sai-krog-prieo .
NCBI tax id
- NCBI tax id: 337330
- Matching level: subspecies
strain history
- @ref: 67770
- history: S. Tanasupawat F7-1.
doi: 10.13145/bacdive165787.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactiplantibacillus
- species: Lactiplantibacillus plantarum subsp. plantarum
- full scientific name: Lactiplantibacillus plantarum subsp. plantarum (Orla-Jensen 1919) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus plantarum subsp. plantarum
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactiplantibacillus
species: Lactiplantibacillus plantarum subsp. plantarum
full scientific name: Lactiplantibacillus plantarum subsp. plantarum (Orla-Jensen 1919) Zheng et al. 2020
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 97.512 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.996 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sai-krog-prieo (sour pork sausage)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lactiplantibacillus plantarum subsp. plantarum JCM 8341 | GCA_019655875 | scaffold | ncbi | 337330 |
| 66792 | Lactiplantibacillus plantarum subsp. plantarum strain JCM 8341 | 337330.94 | wgs | patric | 337330 |
GC content
- @ref: 67770
- GC-content: 44
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 96.595 | no |
| gram-positive | yes | 95.963 | no |
| anaerobic | no | 89.559 | no |
| aerobic | no | 97.346 | no |
| halophile | yes | 84.436 | no |
| spore-forming | no | 92.812 | no |
| motile | no | 94.403 | no |
| thermophile | no | 99.896 | yes |
| glucose-util | yes | 92.159 | no |
| glucose-ferment | yes | 88.223 | no |
External links
@ref: 67770
culture collection no.: JCM 8341, TISTR 844
straininfo link
- @ref: 114612
- straininfo: 65348
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114612 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID65348.1 |