Strain identifier

BacDive ID: 16569

Type strain: Yes

Species: Nonomuraea wenchangensis

Strain Designation: 210417

Culture col. no.: DSM 45477, CGMCC 4.5598

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17275

BacDive-ID: 16569

DSM-Number: 45477

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Nonomuraea wenchangensis 210417 is a mesophilic bacterium that was isolated from rhizosphere soil of the mangrove Bruguiera sexangula.

strain history: <- K. Hong, Chinese Acad. Tropical Agricult. Sci., Haikou, China; 210417 <- X. Xu

doi: 10.13145/bacdive16569.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea wenchangensis
  • full scientific name: Nonomuraea wenchangensis Wang et al. 2011

@ref: 17275

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea wenchangensis

full scientific name: Nonomuraea wenchangensis Wang et al. 2011

strain designation: 210417

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 17275
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

  • @ref: 17275
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 17275
  • sample type: rhizosphere soil of the mangrove Bruguiera sexangula
  • host species: Bruguiera sexangula
  • geographic location: Wenchang, Hainan province
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Soil
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 17275
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17275
  • description: Nonomuraea wenchangensis strain 210417 16S ribosomal RNA gene, partial sequence
  • accession: FJ261959
  • length: 1484
  • database: ena
  • NCBI tax ID: 568860

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonomuraea wenchangensis CGMCC 4.5598GCA_900111685scaffoldncbi568860
66792Nonomuraea wenchangensis strain CGMCC 4.5598568860.3wgspatric568860
66792Nonomuraea wenchangensis CGMCC 4.55982675903060permanentimg568860

GC content

  • @ref: 17275
  • GC-content: 72
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 17275

culture collection no.: DSM 45477, CGMCC 4.5598

straininfo link

@refpassport
20218http://www.straininfo.net/strains/866083
20218http://www.straininfo.net/strains/866082

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17275Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45477)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45477
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)