Strain identifier
BacDive ID: 165545
Type strain: 
Species: Sphingomonas paucimobilis
Strain history: GIFU 2137 <-- M. Minamide.
NCBI tax ID(s): 13689 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165545
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingomonas paucimobilis JCM 7518 is a mesophilic bacterium that was isolated from Vaginal swab.
NCBI tax id
- NCBI tax id: 13689
- Matching level: species
strain history
- @ref: 67770
- history: GIFU 2137 <-- M. Minamide.
doi: 10.13145/bacdive165545.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas paucimobilis
- full scientific name: Sphingomonas paucimobilis (Holmes et al. 1977) Yabuuchi et al. 1990
synonyms
- @ref: 20215
- synonym: Pseudomonas paucimobilis
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas paucimobilis
full scientific name: Sphingomonas paucimobilis (Holmes et al. 1977) Yabuuchi et al. 1990
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Vaginal swab
taxonmaps
- @ref: 69479
- File name: preview.99_2134.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_761;97_956;98_1667;99_2134&stattab=map
- Last taxonomy: Sphingomonas paucimobilis
- 16S sequence: LC504032
- Sequence Identity:
- Total samples: 942
- soil counts: 195
- aquatic counts: 244
- animal counts: 345
- plant counts: 158
Sequence information
16S sequences
- @ref: 67770
- description: Sphingomonas paucimobilis JCM 7518 gene for 16S ribosomal RNA, partial sequence
- accession: LC504032
- length: 1411
- database: ena
- NCBI tax ID: 13689
GC content
- @ref: 67770
- GC-content: 62.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 7518, GIFU 2137
straininfo link
- @ref: 114523
- straininfo: 65116
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 114523 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID65116.1 |