Strain identifier
BacDive ID: 165441
Type strain: 
Species: Salmonella enterica subsp. enterica
Strain history: IFO 14209 <-- RTCI <-- Natl. Cancer Center, Res. Inst., Japan <-- Univ. California (B. N. Ames TA 1535).
NCBI tax ID(s): 59201 (subspecies)
General
@ref: 67770
BacDive-ID: 165441
keywords: 16S sequence, Bacteria
description: Salmonella enterica subsp. enterica JCM 6979 is a bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 59201
- Matching level: subspecies
strain history
- @ref: 67770
- history: IFO 14209 <-- RTCI <-- Natl. Cancer Center, Res. Inst., Japan <-- Univ. California (B. N. Ames TA 1535).
doi: 10.13145/bacdive165441.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica subsp. enterica
- full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
- @ref: 20215
- synonym: Salmonella choleraesuis subsp. choleraesuis
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica subsp. enterica
full scientific name: Salmonella enterica subsp. enterica Le Minor and Popoff 1987
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_9.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_8;99_9&stattab=map
- Last taxonomy: Salmonella enterica
- 16S sequence: LC462180
- Sequence Identity:
- Total samples: 28103
- soil counts: 1084
- aquatic counts: 2005
- animal counts: 23018
- plant counts: 1996
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Salmonella enterica subsp. enterica JCM 6979 gene for 16S ribosomal RNA, partial sequence | LC462180 | 1464 | nuccore | 59201 |
| 124043 | Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: NBRC 14209. | AB680588 | 1467 | nuccore | 59201 |
External links
@ref: 67770
culture collection no.: JCM 6979, IFO 14209, NBRC 14209
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |