Strain identifier
BacDive ID: 165268
Type strain: 
Species: Rhizobium sp.
Strain history: P.-P. Chang 117 <-- S. Ikemoto KS 0180 <-- S. Ikemoto NP8-9-1.
NCBI tax ID(s): 1118467 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165268
keywords: 16S sequence, Bacteria, mesophilic
description: Rhizobium sp. JCM 5502 is a mesophilic bacterium of the family Rhizobiaceae.
NCBI tax id
- NCBI tax id: 1118467
- Matching level: species
strain history
- @ref: 67770
- history: P.-P. Chang 117 <-- S. Ikemoto KS 0180 <-- S. Ikemoto NP8-9-1.
doi: 10.13145/bacdive165268.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium sp.
- full scientific name: Rhizobium Frank 1889 (Approved Lists 1980)
synonyms
@ref synonym 20215 Heterorhizobium 20215 Paenirhizobium 20215 Alirhizobium 20215 Peteryoungia
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium sp.
full scientific name: Rhizobium sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_376.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_6;97_6;98_6;99_376&stattab=map
- Last taxonomy: Agrobacterium
- 16S sequence: AB685697
- Sequence Identity:
- Total samples: 88
- soil counts: 7
- aquatic counts: 6
- animal counts: 33
- plant counts: 42
Sequence information
16S sequences
- @ref: 67770
- description: Rhizobium sp. JCM 5502 gene for 16S ribosomal RNA, partial sequence
- accession: AB685697
- length: 1407
- database: ena
- NCBI tax ID: 1118467
External links
@ref: 67770
culture collection no.: JCM 5502
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |