Strain identifier

BacDive ID: 16518

Type strain: No

Species: Microbispora rosea

Strain Designation: FYU M-2

Strain history: KCC A-0024 <-- H. Nonomura M-2.

NCBI tax ID(s): 58118 (subspecies)

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General

@ref: 11322

BacDive-ID: 16518

DSM-Number: 43838

keywords: 16S sequence, Bacteria, mesophilic

description: Microbispora rosea FYU M-2 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 58118
  • Matching level: subspecies

strain history

@refhistory
11322<- JCM <- KCC <- H. Nonomura, FYU M-2
67770KCC A-0024 <-- H. Nonomura M-2.

doi: 10.13145/bacdive16518.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Microbispora
  • species: Microbispora rosea
  • full scientific name: Microbispora rosea Nonomura and Ohara 1957 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Microbispora parva
    20215Microbispora karnatakensis
    20215Microbispora chromogenes
    20215Microbispora indica
    20215Microbispora diastatica
    20215Microbispora amethystogenes

@ref: 11322

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Microbispora

species: Microbispora rosea subsp. rosea

full scientific name: Microbispora rosea subsp. rosea (Nonomura and Ohara 1957) Miyadoh et al. 1991

strain designation: FYU M-2

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
11322GPHF-MEDIUM (DSMZ Medium 553)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf
11322NUTRIENT AGAR (DSMZ Medium 1)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf

culture temp

@refgrowthtypetemperaturerange
11322positivegrowth37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-9(H4), MK-9

Isolation, sampling and environmental information

isolation

@refsample type
11322soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1608.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_910;97_1060;98_1268;99_1608&stattab=map
  • Last taxonomy: Microbispora
  • 16S sequence: U48985
  • Sequence Identity:
  • Total samples: 898
  • soil counts: 736
  • aquatic counts: 43
  • animal counts: 85
  • plant counts: 34

Safety information

risk assessment

  • @ref: 11322
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Microbispora parva 16S rRNA gene
  • accession: U48985
  • length: 1414
  • database: ena
  • NCBI tax ID: 58118

GC content

@refGC-contentmethod
6777071thermal denaturation, midpoint method (Tm)
6777069.8high performance liquid chromatography (HPLC)

External links

@ref: 11322

culture collection no.: DSM 43838, ATCC 33326, CBS 306.61, IFO 14043, JCM 3024, KCC A-0024, NBRC 14043, NRRL B-2629, RIA 766, BCRC 13358, CGMCC 4.1343, IFM 1266, IMSNU 20078, IMSNU 22106, KCTC 9317

straininfo link

  • @ref: 85551
  • straininfo: 319105

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11322Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43838)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43838
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85551Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID319105.1StrainInfo: A central database for resolving microbial strain identifiers