Strain identifier
BacDive ID: 165145
Type strain: 
Species: Carnobacterium maltaromaticum
Strain history: J. L. Fryer OS 3-68.
NCBI tax ID(s): 2751 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 165145
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Carnobacterium maltaromaticum JCM 5349 is a Gram-positive bacterium that was isolated from Diseased adult cutthroat trout.
NCBI tax id
- NCBI tax id: 2751
- Matching level: species
strain history
- @ref: 67770
- history: J. L. Fryer OS 3-68.
doi: 10.13145/bacdive165145.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Carnobacteriaceae
- genus: Carnobacterium
- species: Carnobacterium maltaromaticum
- full scientific name: Carnobacterium maltaromaticum corrig. (Miller et al. 1974) Mora et al. 2003
synonyms
@ref synonym 20215 Lactobacillus maltaromicus 20215 Lactobacillus carnis 20215 Carnobacterium piscicola 20215 Lactobacillus piscicola
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Carnobacteriaceae
genus: Carnobacterium
species: Carnobacterium maltaromaticum
full scientific name: Carnobacterium maltaromaticum (Miller et al. 1974) Mora et al. 2003
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 90.436
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Diseased adult cutthroat trout
taxonmaps
- @ref: 69479
- File name: preview.99_2222.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_41;97_1423;98_1732;99_2222&stattab=map
- Last taxonomy: Carnobacterium maltaromaticum
- 16S sequence: LC269270
- Sequence Identity:
- Total samples: 12837
- soil counts: 1440
- aquatic counts: 2720
- animal counts: 8257
- plant counts: 420
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Carnobacterium maltaromaticum gene for 16S ribosomal RNA, partial sequence, strain: JCM 5349 | LC269270 | 1496 | nuccore | 2751 |
| 124043 | Carnobacterium maltaromaticum gene for 16S rRNA, partial sequence, strain: NBRC 15685. | AB680942 | 1492 | nuccore | 2751 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Carnobacterium maltaromaticum strain NBRC 15685 | 2751.254 | wgs | patric | 2751 |
| 67770 | Carnobacterium maltaromaticum NBRC 15685 | GCA_006540145 | contig | ncbi | 2751 |
GC content
- @ref: 67770
- GC-content: 36.3
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 71 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.436 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.568 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 65.402 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 91.884 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.915 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 83.09 | no |
External links
@ref: 67770
culture collection no.: JCM 5349, IFO 15685, NBRC 15685
straininfo link
- @ref: 114381
- straininfo: 62325
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114381 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID62325.1 |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |