Strain identifier

BacDive ID: 16504

Type strain: Yes

Species: Acrocarpospora corrugata

Strain Designation: E 90

Culture col. no.: DSM 43316, ATCC 29331, IFO 13972, NBRC 13972, NCIB 11120

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General

@ref: 10952

BacDive-ID: 16504

DSM-Number: 43316

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Acrocarpospora corrugata E 90 is a mesophilic bacterium that was isolated from beach sand.

strain history: <- S.T. Williams, E 90

doi: 10.13145/bacdive16504.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Acrocarpospora
  • species: Acrocarpospora corrugata
  • full scientific name: Acrocarpospora corrugata (Williams and Sharples 1976) Tamura et al. 2000
  • synonyms

    • @ref: 20215
    • synonym: Streptosporangium corrugatum

@ref: 10952

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Acrocarpospora

species: Acrocarpospora corrugata

full scientific name: Acrocarpospora corrugata (Williams and Sharples 1976) Tamura et al. 2000

strain designation: E 90

type strain: yes

Morphology

colony morphology

@refcolony colorincubation periodmedium used
19566Ochre yellow10-14 daysISP 2
19566Ochre yellow10-14 daysISP 3
19566Ochre yellow10-14 daysISP 4
19566Ochre yellow10-14 daysISP 5
19566Ochre yellow10-14 daysISP 6
19566Ochre yellow10-14 daysISP 7

multicellular morphology

@refforms multicellular complexmedium name
19566noISP 2
19566noISP 3
19566noISP 4
19566noISP 5
19566noISP 6
19566noISP 7

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10952GYM+S MEDIUM (DSMZ Medium 214)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium214.pdf
19566ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19566ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19566ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19566ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19566ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19566ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

culture temp

@refgrowthtypetemperaturerange
10952positivegrowth28mesophilic
19566positiveoptimum30mesophilic

Physiology and metabolism

halophily

  • @ref: 19566
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activity
1956617234glucose+
1956622599arabinose+
1956617992sucrose+
1956618222xylose+/-
1956617268myo-inositol+/-
1956629864mannitol+/-
1956628757fructose+/-
1956626546rhamnose+
1956616634raffinose+/-
1956662968cellulose+/-

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
19566+-+-++---++++-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19566------+---+

Isolation, sampling and environmental information

isolation

  • @ref: 10952
  • sample type: beach sand

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Coast
#Environmental#Terrestrial#Sandy

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
109521Risk group (German classification)
195661Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218S.corrugatum gene for 16S ribosomal RNAX704271370ena35763
20218S.corrugatum DNA for 16S ribosomal RNA geneX899411449ena35763
20218Streptosporangium corrugatum 16S-23S ribosomal RNA spacer regionAF004011415ena35763
20218Streptosporangium corrugatum 16S rRNA geneU489911417ena35763
20218Acrocarpospora corrugata gene for 16S rRNA, partial sequenceAB1881501479ena35763

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acrocarpospora corrugata NBRC 13972GCA_009687845scaffoldncbi35763
66792Acrocarpospora corrugata strain NBRC 1397235763.4wgspatric35763

External links

@ref: 10952

culture collection no.: DSM 43316, ATCC 29331, IFO 13972, NBRC 13972, NCIB 11120

straininfo link

@refpassport
20218http://www.straininfo.net/strains/106734
20218http://www.straininfo.net/strains/106732
20218http://www.straininfo.net/strains/106735
20218http://www.straininfo.net/strains/333532
20218http://www.straininfo.net/strains/106736

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10952Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43316)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43316
19566Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM43316.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)