Strain identifier

BacDive ID: 16503

Type strain: Yes

Species: Streptomyces endophyticus

Culture col. no.: DSM 41984, CCTCC AA 209036, YIM 65594

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16372

BacDive-ID: 16503

DSM-Number: 41984

keywords: mesophilic, spore-forming, aerobe, Bacteria, 16S sequence, gram-positive

description: Streptomyces endophyticus DSM 41984 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface-sterilized roots of Artemisia annua L..

strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 65594 <- J. Li, Yunnan Univ., Kunming

doi: 10.13145/bacdive16503.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces endophyticus
  • full scientific name: Streptomyces endophyticus Li et al. 2013

@ref: 16372

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces endophyticus

full scientific name: Streptomyces endophyticus Li et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 30422
  • gram stain: positive
  • cell length: 0.775 µm
  • cell width: 0.42 µm
  • motility: no

pigmentation

  • @ref: 30422
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlink
16372GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
16372ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
16372positivegrowth28mesophilic
30422positivegrowth10-37
30422positiveoptimum24psychrophilic

culture pH

@refabilitytypepH
30422positivegrowth06-09
30422positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30422
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30422
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30422NaClpositivegrowth0-10 %
30422NaClpositiveoptimum5 %

observation

  • @ref: 30422
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3042216449alanine+carbon source
3042222599arabinose+carbon source
3042229016arginine+carbon source
3042222653asparagine+carbon source
3042217057cellobiose+carbon source
3042228757fructose+carbon source
3042228260galactose+carbon source
3042217754glycerol+carbon source
3042215428glycine+carbon source
30422182404-hydroxy-L-proline+carbon source
3042217716lactose+carbon source
3042217306maltose+carbon source
3042237684mannose+carbon source
3042228044phenylalanine+carbon source
3042226546rhamnose+carbon source
3042233942ribose+carbon source
3042217822serine+carbon source
3042253424tween 20+carbon source
3042253423tween 40+carbon source
3042253426tween 80+carbon source

enzymes

@refvalueactivityec
30422catalase+1.11.1.6
30422gelatinase+
30422urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 16372
  • sample type: surface-sterilized roots of Artemisia annua L.
  • host species: Artemisia annua
  • geographic location: Yunnan province, Kunming
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

Safety information

risk assessment

  • @ref: 16372
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
16372Streptomyces endophyticus strain YIM 65594 16S ribosomal RNA gene, partial sequenceGU3671541522ena714166
16372Streptomyces endophyticus strain RBS 05 16S ribosomal RNA gene, partial sequenceDSM_419841421ena714166

GC content

  • @ref: 16372
  • GC-content: 72

External links

@ref: 16372

culture collection no.: DSM 41984, CCTCC AA 209036, YIM 65594

straininfo link

@refpassport
20218http://www.straininfo.net/strains/884287
20218http://www.straininfo.net/strains/884286
20218http://www.straininfo.net/strains/884285

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16372Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41984)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41984
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2675810.1099/ijs.0.035725-0
30422Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26758