Strain identifier
BacDive ID: 164797
Type strain: 
Species: Vibrio fluvialis
Strain history: T. Shimada 209-73.
NCBI tax ID(s): 676 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 164797
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Vibrio fluvialis JCM 3735 is a mesophilic, Gram-negative bacterium of the family Vibrionaceae.
NCBI tax id
- NCBI tax id: 676
- Matching level: species
strain history
- @ref: 67770
- history: T. Shimada 209-73.
doi: 10.13145/bacdive164797.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio fluvialis
- full scientific name: Vibrio fluvialis Lee et al. 1981
synonyms
- @ref: 20215
- synonym: Allomonas enterica
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio fluvialis
full scientific name: Vibrio fluvialis Lee et al. 1981
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_418.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_312;98_347;99_418&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: LC420078
- Sequence Identity:
- Total samples: 3818
- soil counts: 168
- aquatic counts: 1720
- animal counts: 1806
- plant counts: 124
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio fluvialis JCM 3735 gene for 16S ribosomal RNA, partial sequence
- accession: LC420078
- length: 1475
- database: nuccore
- NCBI tax ID: 676
Genome sequences
- @ref: 66792
- description: Vibrio fluvialis JCM3735
- accession: GCA_021395035
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 676
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.604 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 67.996 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.51 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 89.597 | no |
External links
@ref: 67770
culture collection no.: JCM 3735
straininfo link
- @ref: 114227
- straininfo: 64148
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 114227 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID64148.1 |