Strain identifier
BacDive ID: 164730
Type strain: 
Species: Mucilaginibacter inviolabilis
Strain history: S.-R. Ko; KRIBB, South Korea; HC2.
NCBI tax ID(s): 2714892 (species)
General
@ref: 67770
BacDive-ID: 164730
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Mucilaginibacter inviolabilis JCM 34116 is a mesophilic, Gram-negative bacterium that was isolated from Phycosphere of Haematococcus lacustris NIES 144 culture.
NCBI tax id
- NCBI tax id: 2714892
- Matching level: species
strain history
- @ref: 67770
- history: S.-R. Ko; KRIBB, South Korea; HC2.
doi: 10.13145/bacdive164730.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Mucilaginibacter
- species: Mucilaginibacter inviolabilis
- full scientific name: Mucilaginibacter inviolabilis Lee et al. 2021
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Mucilaginibacter
species: Mucilaginibacter inviolabilis
full scientific name: Mucilaginibacter inviolabilis Lee et al. 2021
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.965
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.974 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Phycosphere of Haematococcus lacustris NIES 144 culture
- host species: Haematococcus lacustris
Sequence information
16S sequences
- @ref: 67770
- description: Mucilaginibacter sp. strain HC2 16S ribosomal RNA gene, partial sequence
- accession: MT197490
- length: 1510
- database: ena
- NCBI tax ID: 2714892
Genome sequences
- @ref: 67770
- description: Mucilaginibacter inviolabilis HC2
- accession: GCA_011089895
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2714892
GC content
- @ref: 67770
- GC-content: 42
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 89.9 | no |
| flagellated | no | 97.011 | no |
| gram-positive | no | 96.999 | no |
| anaerobic | no | 99.562 | no |
| aerobic | yes | 90.203 | no |
| halophile | no | 95.954 | no |
| spore-forming | no | 92.219 | no |
| thermophile | no | 99.467 | yes |
| glucose-util | yes | 88.505 | no |
| glucose-ferment | no | 90.528 | no |
External links
@ref: 67770
culture collection no.: JCM 34116, KCTC 82084
literature
- topic: Phylogeny
- Pubmed-ID: 33502297
- title: Mucilaginibacter inviolabilis sp. nov., isolated from the phycosphere of Haematococcus lacustris NIES 144 culture.
- authors: Lee SA, Le VV, Ko SR, Lee N, Oh HM, Ahn CY
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004668
- year: 2021
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |