Strain identifier
BacDive ID: 164705
Type strain: 
Species: Lacticaseibacillus absianus
Strain history: Y.-H. Chang; KRIBB, South Korea; YH-lac23.
NCBI tax ID(s): 2729623 (species)
General
@ref: 67770
BacDive-ID: 164705
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Lacticaseibacillus absianus JCM 33998 is a mesophilic, Gram-positive bacterium that was isolated from Cecum of a mini-pig.
NCBI tax id
- NCBI tax id: 2729623
- Matching level: species
strain history
- @ref: 67770
- history: Y.-H. Chang; KRIBB, South Korea; YH-lac23.
doi: 10.13145/bacdive164705.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus absianus
- full scientific name: Lacticaseibacillus absianus Bai et al. 2021
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus absianus
full scientific name: Lacticaseibacillus absianus Bai et al. 2021
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 95.314 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.985 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Cecum of a mini-pig
- geographic location: Daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Lactobacillus sp. strain YH-lac23 16S ribosomal RNA gene, partial sequence
- accession: MT009028
- length: 1484
- database: ena
- NCBI tax ID: 2729623
Genome sequences
- @ref: 67770
- description: Lacticaseibacillus absianus YH-lac23
- accession: GCA_013407595
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2729623
GC content
- @ref: 67770
- GC-content: 59.8
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 93.253 | no |
| flagellated | no | 97.067 | no |
| gram-positive | yes | 95.699 | no |
| anaerobic | no | 95.766 | no |
| aerobic | no | 97.994 | no |
| halophile | yes | 83.636 | no |
| spore-forming | no | 93.409 | no |
| glucose-util | yes | 90.591 | no |
| thermophile | no | 98.722 | yes |
| glucose-ferment | yes | 89.042 | no |
External links
@ref: 67770
culture collection no.: JCM 33998, KCTC 25006
literature
- topic: Phylogeny
- Pubmed-ID: 33724174
- title: Lacticaseibacillus absianus sp. nov., isolated from the cecum of a mini-pig.
- authors: Bai L, Paek J, Shin Y, Park HY, Chang YH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004752
- year: 2021
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |