Archive BacDiveID:10.13145/bacdive164702.20230509.8.1

Strain identifier

BacDive ID: 164702

Type strain:

Species: Novosphingobium aquimarinum

Strain history: S.-R. Ko; KRIBB, South Korea; M24A2M.

NCBI tax ID(s): 2682494 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 164702

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Novosphingobium aquimarinum JCM 33983 is a mesophilic bacterium that was isolated from Seawater .

NCBI tax id

NCBI tax id: 2682494
Matching level: species

strain history

@ref: 67770
history: S.-R. Ko; KRIBB, South Korea; M24A2M.

doi: 10.13145/bacdive164702.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Novosphingobium
species: Novosphingobium aquimarinum
full scientific name: Novosphingobium aquimarinum Le et al. 2020

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Novosphingobium

species: Novosphingobium aquimarinum

full scientific name: Novosphingobium aquimarinum Le et al. 2020

type strain: yes

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 25
range: mesophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: Q-10

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Seawater (34° 40' 44" N, 128° 23' 30" E)
latitude: 34.6789
longitude: 128.392

taxonmaps

@ref: 69479
File name: preview.99_71445.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_795;97_38562;98_50092;99_71445&stattab=map
Last taxonomy: Novosphingobium
16S sequence: MN826708
Sequence Identity:
Total samples: 43
soil counts: 18
aquatic counts: 22
animal counts: 3

Sequence information

16S sequences

@ref: 67770
description: Novosphingobium sp. strain M24A2M 16S ribosomal RNA gene, partial sequence
accession: MN826708
length: 1353
database: ena
NCBI tax ID: 1874826

Genome sequences

@ref: 67770
description: Novosphingobium aquimarinum M24A2M
accession: GCA_009746585
assembly level: contig
database: ncbi
NCBI tax ID: 2682494

GC content

@ref: 67770
GC-content: 63.9
method: genome sequence analysis

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	53.485	no
flagellated	no	88.543	no
gram-positive	no	97.153	no
anaerobic	no	98.908	no
aerobic	yes	93.393	no
halophile	no	93.243	no
spore-forming	no	94.791	no
glucose-util	yes	89.947	no
thermophile	no	97.572	yes
glucose-ferment	no	93.396	no

External links

@ref: 67770

culture collection no.: JCM 33983, KCTC 72894

literature

topic: Phylogeny
Pubmed-ID: 33034548
title: Novosphingobium aquimarinum sp. nov., isolated from seawater.
authors: Le VV, Ko SR, Lee SA, Jin L, Ahn CY, Oh HM
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.004493
year: 2020
mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Sphingomonadaceae/*classification/isolation & purification, Ubiquinone/analogs & derivatives/chemistry
topic2: Transcriptome

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/