Strain identifier
BacDive ID: 164691
Type strain: 
Species: Mucilaginibacter humi
Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; S1162.
NCBI tax ID(s): 2732510 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164691
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mucilaginibacter humi JCM 33916 is a mesophilic bacterium that was isolated from Soil in the Republic of Korea.
NCBI tax id
- NCBI tax id: 2732510
- Matching level: species
strain history
- @ref: 67770
- history: C. O. Jeon; Chung-Ang Univ., South Korea; S1162.
doi: 10.13145/bacdive164691.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Mucilaginibacter
- species: Mucilaginibacter humi
- full scientific name: Mucilaginibacter humi Seo et al. 2020
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Mucilaginibacter
species: Mucilaginibacter humi
full scientific name: Mucilaginibacter humi Seo et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil in the Republic of Korea
Sequence information
16S sequences
- @ref: 67770
- description: Mucilaginibacter sp. strain S1162 16S ribosomal RNA gene, partial sequence
- accession: MN620420
- length: 1444
- database: ena
- NCBI tax ID: 1882438
Genome sequences
- @ref: 67770
- description: Mucilaginibacter humi S1162
- accession: GCA_013087555
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2732510
GC content
- @ref: 67770
- GC-content: 42.9
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.647 | no |
| flagellated | no | 98.242 | no |
| gram-positive | no | 93.907 | no |
| anaerobic | no | 97.425 | no |
| aerobic | yes | 83.94 | no |
| halophile | no | 93.953 | no |
| spore-forming | no | 96.704 | no |
| glucose-util | yes | 81.307 | no |
| thermophile | no | 97.576 | no |
| glucose-ferment | no | 85.223 | no |
External links
@ref: 67770
culture collection no.: JCM 33916, KACC 21669
literature
- topic: Phylogeny
- Pubmed-ID: 32667873
- title: Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil.
- authors: Seo YL, Khan SA, Kim HM, Chun BH, Han DM, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004321
- year: 2020
- mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |