Strain identifier
BacDive ID: 164678
Type strain: 
Species: Arthrobacter zhaoguopingii
Strain history: J. Yang; China CDC, China; J391.
NCBI tax ID(s): 2681491 (species)
General
@ref: 67770
BacDive-ID: 164678
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Arthrobacter zhaoguopingii JCM 33841 is a mesophilic bacterium that was isolated from Droppings of ruddy shelduck in the Qinghai-Tibet Plateau.
NCBI tax id
- NCBI tax id: 2681491
- Matching level: species
strain history
- @ref: 67770
- history: J. Yang; China CDC, China; J391.
doi: 10.13145/bacdive164678.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter zhaoguopingii
- full scientific name: Arthrobacter zhaoguopingii Ge et al. 2020
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter zhaoguopingii
full scientific name: Arthrobacter zhaoguopingii Ge et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H2) and MK-9(H2)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Droppings of ruddy shelduck (Tadorna ferruginea) in the Qinghai-Tibet Plateau
- host species: Tadorna ferruginea
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Arthrobacter sp. strain J391 16S ribosomal RNA gene, partial sequence
- accession: MN203626
- length: 1491
- database: ena
- NCBI tax ID: 2681491
Genome sequences
- @ref: 67770
- description: Arthrobacter zhaoguopingii J391
- accession: GCA_009828595
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2681491
GC content
- @ref: 67770
- GC-content: 68
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 61.543 | no |
| flagellated | no | 90.549 | no |
| gram-positive | yes | 94.645 | no |
| anaerobic | no | 99.617 | no |
| aerobic | yes | 96.308 | no |
| halophile | no | 82.666 | no |
| spore-forming | no | 87.474 | no |
| glucose-util | yes | 88.73 | no |
| thermophile | no | 98.522 | yes |
| glucose-ferment | no | 89.914 | no |
External links
@ref: 67770
culture collection no.: JCM 33841, CGMCC 1.17382, GDMCC 1.1667
literature
- topic: Phylogeny
- Pubmed-ID: 32841110
- title: Arthrobacter yangruifuii sp. nov. and Arthrobacter zhaoguopingii sp. nov., two new members of the genus Arthrobacter.
- authors: Ge Y, Tao Y, Yang J, Lai XH, Jin D, Lu S, Huang Y, Luo X, Zhou J, Zhang X, Xu J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004414
- year: 2020
- mesh: Animals, Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Ducks/microbiology, Equidae/microbiology, Fatty Acids/chemistry, Feces/*microbiology, Lagomorpha/microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |