Strain identifier
BacDive ID: 164657
Type strain: 
Species: Muricauda ochracea
Strain history: J.-J. Kim; Korea Univ., South Korea; JGD-17.
NCBI tax ID(s): 2696472 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164657
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Muricauda ochracea JCM 33817 is a mesophilic, Gram-negative bacterium that was isolated from Tidal flat of Janggu-do.
NCBI tax id
- NCBI tax id: 2696472
- Matching level: species
strain history
- @ref: 67770
- history: J.-J. Kim; Korea Univ., South Korea; JGD-17.
doi: 10.13145/bacdive164657.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Muricauda
- species: Muricauda ochracea
- full scientific name: Muricauda ochracea Kim et al. 2020
synonyms
- @ref: 20215
- synonym: Allomuricauda ochracea
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Muricauda
species: Muricauda ochracea
full scientific name: Muricauda ochracea Kim et al. 2020
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.986 | |
| 69480 | 91.563 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.998 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Tidal flat of Janggu-do
- geographic location: Garorim bay, Taean-gun, Chungcheongbuk-do
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Muricauda sp. JGD-17 16S ribosomal RNA gene, partial sequence
- accession: MN908334
- length: 1428
- database: ena
- NCBI tax ID: 2696472
Genome sequences
- @ref: 67770
- description: Allomuricauda ochracea JGD-17
- accession: GCA_009903685
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2696472
GC content
- @ref: 67770
- GC-content: 41.1
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.199 | no |
| flagellated | no | 95.567 | no |
| gram-positive | no | 98.422 | no |
| anaerobic | no | 99.21 | no |
| aerobic | yes | 89.723 | no |
| halophile | no | 73.719 | no |
| spore-forming | no | 96.892 | no |
| glucose-util | yes | 88.065 | no |
| thermophile | no | 98.125 | yes |
| glucose-ferment | no | 89.63 | no |
External links
@ref: 67770
culture collection no.: JCM 33817, KACC 21486, KCTC 72732
literature
- topic: Phylogeny
- Pubmed-ID: 32721276
- title: Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.
- authors: Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004312
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |