Strain identifier
BacDive ID: 164643
Type strain: 
Species: Salinadaptatus halalkaliphilus
Strain history: Q. Xue; Inst. of Microbiol., CAS, China; XQ-INN 246.
NCBI tax ID(s): 2419781 (species)
General
@ref: 67770
BacDive-ID: 164643
keywords: genome sequence, 16S sequence, Archaea, mesophilic, Gram-negative
description: Salinadaptatus halalkaliphilus JCM 33751 is a mesophilic, Gram-negative archaeon that was isolated from Sediment of salt pond in Inner Mongolia Autonomonus Region.
NCBI tax id
- NCBI tax id: 2419781
- Matching level: species
strain history
- @ref: 67770
- history: Q. Xue; Inst. of Microbiol., CAS, China; XQ-INN 246.
doi: 10.13145/bacdive164643.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Salinadaptatus
- species: Salinadaptatus halalkaliphilus
- full scientific name: Salinadaptatus halalkaliphilus Xue et al. 2021
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Natrialbales
family: Natrialbaceae
genus: Salinadaptatus
species: Salinadaptatus halalkaliphilus
full scientific name: Salinadaptatus halalkaliphilus Xue et al. 2021
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.964
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.995 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-8, MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sediment of salt pond in Inner Mongolia Autonomonus Region
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Natronolimnobius sp. strain XQ-INN 246 16S ribosomal RNA gene, partial sequence
- accession: MK226479
- length: 1473
- database: ena
- NCBI tax ID: 2419781
Genome sequences
- @ref: 67770
- description: Salinadaptatus halalkaliphilus XQ-INN 246
- accession: GCA_006543045
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2419781
GC content
- @ref: 67770
- GC-content: 62.06
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 82.782 | no |
| flagellated | no | 96.039 | no |
| gram-positive | no | 97.486 | no |
| anaerobic | no | 96.485 | no |
| aerobic | yes | 82.161 | no |
| halophile | yes | 85.123 | no |
| spore-forming | no | 92.565 | no |
| glucose-util | yes | 86.231 | no |
| thermophile | no | 91.433 | yes |
| glucose-ferment | no | 83.469 | no |
External links
@ref: 67770
culture collection no.: JCM 33751, CGMCC 1.16692
literature
- topic: Phylogeny
- Pubmed-ID: 33275091
- title: Salinadaptatus halalkaliphilus gen. nov., sp. nov., a haloalkaliphilic archaeon isolated from salt pond in Inner Mongolia Autonomous Region, China.
- authors: Xue Q, Zuo Z, Zhou H, Zhou J, Zhang S, Han J, Zhao D, Xiang H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004584
- year: 2020
- mesh: Base Composition, China, DNA, Archaeal/genetics, Halobacteriaceae/*classification/isolation & purification, Phosphatidylglycerols/chemistry, Phospholipids/chemistry, *Phylogeny, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, *Saline Waters, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |