Strain identifier
BacDive ID: 164594
Type strain: 
Species: Jiangella asiatica
Strain history: N. Sahin; Ondokuz Mayis Univ., Turkey; 5K138.
NCBI tax ID(s): 2530372 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164594
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Jiangella asiatica JCM 33518 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Soil from the Karakum Desert.
NCBI tax id
- NCBI tax id: 2530372
- Matching level: species
strain history
- @ref: 67770
- history: N. Sahin; Ondokuz Mayis Univ., Turkey; 5K138.
doi: 10.13145/bacdive164594.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Jiangellales
- family: Jiangellaceae
- genus: Jiangella
- species: Jiangella asiatica
- full scientific name: Jiangella asiatica Saygin et al. 2020
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Jiangellales
family: Jiangellaceae
genus: Jiangella
species: Jiangella asiatica
full scientific name: Jiangella asiatica Saygin et al. 2020
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | positive | 98.6 |
| 125438 | positive | 92.589 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 90.764 |
| 125439 | obligate aerobe | 99.8 |
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil from the Karakum Desert
- country: Turkmenistan
- origin.country: TKM
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_6670.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2023;97_2438;98_3015;99_6670&stattab=map
- Last taxonomy: Jiangella gansuensis
- 16S sequence: MG770727
- Sequence Identity:
- Total samples: 769
- soil counts: 425
- aquatic counts: 42
- animal counts: 248
- plant counts: 54
Sequence information
16S sequences
- @ref: 67770
- description: Jiangella asiatica strain 5K138 16S ribosomal RNA gene, partial sequence
- accession: MG770727
- length: 1483
- database: nuccore
- NCBI tax ID: 2530372
Genome sequences
- @ref: 67770
- description: Jiangella asiatica 5K138
- accession: GCA_004349065
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2530372
GC content
- @ref: 67770
- GC-content: 71
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.589 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.621 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.764 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 69.973 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.491 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 67.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 64.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.8 |
External links
@ref: 67770
culture collection no.: JCM 33518, CGMCC 4.7672
literature
- topic: Phylogeny
- Pubmed-ID: 32228773
- title: Genome-based classification of three novel actinobacteria from the Karakum Desert: Jiangella asiatica sp. nov., Jiangella aurantiaca sp. nov. and Jiangella ureilytica sp. nov.
- authors: Saygin H, Ay H, Guven K, Sahin N
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004011
- year: 2020
- mesh: Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkmenistan, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |