General

@ref: 67770

BacDive-ID: 164585

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Arthrobacter yangruifuii JCM 33491 is a mesophilic bacterium that was isolated from Intestinal content of a plateau pika in the Qinghai-Tibet Plateau.

NCBI tax id

• NCBI tax id: 2606616
• Matching level: species

strain history

• @ref: 67770
• history: J. Yang; China CDC, China; 785.

doi: 10.13145/bacdive164585.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Micrococcales
• family: Micrococcaceae
• genus: Arthrobacter
• species: Arthrobacter yangruifuii
• full scientific name: Arthrobacter yangruifuii Ge et al. 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter yangruifuii

full scientific name: Arthrobacter yangruifuii Ge et al. 2020

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-8(H₂)

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Intestinal content of a plateau pika (Ochotona curzoniae) in the Qinghai-Tibet Plateau
• host species: Ochotona curzoniae
• country: China
• origin.country: CHN
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_8643.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_458;97_525;98_6307;99_8643&stattab=map
• Last taxonomy: Arthrobacter citreus subclade
• 16S sequence: MK634692
• Sequence Identity:
• Total samples: 15
• soil counts: 6
• animal counts: 9

Sequence information

16S sequences

• @ref: 67770
• description: Arthrobacter sp. strain 785 16S ribosomal RNA gene, partial sequence
• accession: MK634692
• length: 1489
• database: ena
• NCBI tax ID: 2606616

Genome sequences

• @ref: 67770
• description: Arthrobacter yangruifuii 785
• accession: GCA_009192775
• assembly level: contig
• database: ncbi
• NCBI tax ID: 2606616

GC content

• @ref: 67770
• GC-content: 66.1
• method: genome sequence analysis

Genome-based predictions

predictions

External links

@ref: 67770

culture collection no.: JCM 33491, CGMCC 1.16725, GDMCC 1.1592

literature

• topic: Phylogeny
• Pubmed-ID: 32841110
• title: Arthrobacter yangruifuii sp. nov. and Arthrobacter zhaoguopingii sp. nov., two new members of the genus Arthrobacter.
• authors: Ge Y, Tao Y, Yang J, Lai XH, Jin D, Lu S, Huang Y, Luo X, Zhou J, Zhang X, Xu J
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.004414
• year: 2020
• mesh: Animals, Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Ducks/microbiology, Equidae/microbiology, Fatty Acids/chemistry, Feces/*microbiology, Lagomorpha/microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
• topic2: Transcriptome

Reference