General

@ref: 67770

BacDive-ID: 164556

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Salicibibacter halophilus JCM 33437 is a mesophilic bacterium that was isolated from Kimuchi collected from the Geumsan area in the Republic of Korea.

NCBI tax id

• NCBI tax id: 2502791
• Matching level: species

strain history

• @ref: 67770
• history: Y. J. Oh; World Inst. of Kimchi, South Korea; NKC3-5.

doi: 10.13145/bacdive164556.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Bacilli
• order: Caryophanales
• family: Bacillaceae
• genus: Salicibibacter
• species: Salicibibacter halophilus
• full scientific name: Salicibibacter halophilus Oh et al. 2021

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Salicibibacter

species: Salicibibacter halophilus

full scientific name: Salicibibacter halophilus Oh et al. 2021

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 35
• range: mesophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Kimuchi collected from the Geumsan area in the Republic of Korea

Sequence information

16S sequences

• @ref: 67770
• description: Salicibibacter halophilus strain NKC3-5 chromosome, complete genome
• accession: CP035485
• length: 3754174
• database: ena
• NCBI tax ID: 2502791

Genome sequences

• @ref: 67770
• description: Salicibibacter halophilus NKC3-5
• accession: GCA_006740705
• assembly level: complete
• database: ncbi
• NCBI tax ID: 2502791

GC content

• @ref: 67770
• GC-content: 45.9
• method: genome sequence analysis

External links

@ref: 67770

culture collection no.: JCM 33437, KACC 21230

literature

• topic: Phylogeny
• Pubmed-ID: 31659686
• title: Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi.
• authors: Oh YJ, Kim JY, Park HK, Jang JY, Lim SK, Kwon MS, Choi HJ
• journal: J Microbiol
• DOI: 10.1007/s12275-019-9421-z
• year: 2019
• mesh: Bacillaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/metabolism, Fatty Acids/chemistry, Fermented Foods/*microbiology, Genes, Bacterial/genetics, Genomics, Halobacteriales, Hydrogen-Ion Concentration, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Salt Tolerance, Sequence Analysis, DNA, Sodium Chloride/metabolism, Vitamin K 2/analogs & derivatives/chemistry, Whole Genome Sequencing
• topic2: Genetics

Reference