Strain identifier
BacDive ID: 164550
Type strain: 
Species: Christiangramia bathymodioli
Strain history: M. Yu; Ocean Univ. of China, China; BOM4.
NCBI tax ID(s): 2541727 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 164550
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Christiangramia bathymodioli JCM 33424 is a Gram-negative bacterium that was isolated from Mussel inhabiting the Tangyin hydrothermal field of the Okinawa Trough.
NCBI tax id
- NCBI tax id: 2541727
- Matching level: species
strain history
- @ref: 67770
- history: M. Yu; Ocean Univ. of China, China; BOM4.
doi: 10.13145/bacdive164550.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Christiangramia
- species: Christiangramia bathymodioli
- full scientific name: Christiangramia bathymodioli (Liu et al. 2020) Deshmukh and Oren 2023
synonyms
- @ref: 20215
- synonym: Gramella bathymodioli
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Gramella
species: Gramella bathymodioli
full scientific name: Gramella bathymodioli Liu et al. 2020
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94 | |
| 69480 | 96.187 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.775
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Mussel inhabiting the Tangyin hydrothermal field of the Okinawa Trough
Sequence information
16S sequences
- @ref: 67770
- description: Christiangramia bathymodioli strain BOM4 16S ribosomal RNA gene, partial sequence
- accession: MH997488
- length: 1537
- database: nuccore
- NCBI tax ID: 1931228
Genome sequences
- @ref: 67770
- description: Christiangramia bathymodioli BOM4
- accession: GCA_009735695
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2541727
GC content
- @ref: 67770
- GC-content: 41.4
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.187 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.068 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.963 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.775 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.595 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94 | no |
External links
@ref: 67770
culture collection no.: JCM 33424, MCCC 1K03735
literature
- topic: Phylogeny
- Pubmed-ID: 32996881
- title: Gramella bathymodioli sp. nov., isolated from a mussel inhabiting a hydrothermal field in the Okinawa Trough.
- authors: Liu L, Wang S, Zhou S, Sun W, Fu T, Zhang Y, Zhang XH, Yu M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004488
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |