Strain identifier
BacDive ID: 164548
Type strain: 
Species: Pseudalkalibacillus caeni
Strain history: K. Mo; Chin. Acad. of Trop. Agric. Sci., China; HB172195.
NCBI tax ID(s): 2574798 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 164548
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Pseudalkalibacillus caeni JCM 33411 is a spore-forming bacterium that was isolated from Mangrove sediment from Bamen Bay mangrove forest.
NCBI tax id
- NCBI tax id: 2574798
- Matching level: species
strain history
- @ref: 67770
- history: K. Mo; Chin. Acad. of Trop. Agric. Sci., China; HB172195.
doi: 10.13145/bacdive164548.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Pseudalkalibacillus
- species: Pseudalkalibacillus caeni
- full scientific name: Pseudalkalibacillus caeni (Mo et al. 2020) Joshi et al. 2022
synonyms
@ref synonym 20215 Alkalihalobacillus caeni 20215 Bacillus caeni
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Alkalihalobacillus
species: Alkalihalobacillus caeni
full scientific name: Alkalihalobacillus caeni (Mo et al. 2020) Gupta et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 92.006
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Mangrove sediment from Bamen Bay mangrove forest
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Pseudalkalibacillus caeni 16S ribosomal RNA gene, partial sequence
- accession: MK249707
- length: 1474
- database: nuccore
- NCBI tax ID: 2574798
Genome sequences
- @ref: 67770
- description: Pseudalkalibacillus caeni HB172195
- accession: GCA_005747095
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2574798
GC content
- @ref: 67770
- GC-content: 40.9
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 77.354 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.84 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 74.733 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.006 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 85.509 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 69.773 | no |
External links
@ref: 67770
culture collection no.: JCM 33411, CGMCC 1.16730
literature
- topic: Phylogeny
- Pubmed-ID: 32100673
- title: Bacillus caeni sp. nov., isolated from mangrove sediment.
- authors: Mo K, Huang H, Bao S, Hu Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003853
- year: 2020
- mesh: Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |