Strain identifier
BacDive ID: 164526
Type strain: 
Species: Vibrio chemaguriensis
Strain history: P. Bhadury; Indian Inst. of Sci. Edu. & Res. Kolkata, India; Iso1.
NCBI tax ID(s): 2527672 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164526
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Vibrio chemaguriensis JCM 33348 is a mesophilic bacterium that was isolated from Chemaguri creek in Sundarbans.
NCBI tax id
- NCBI tax id: 2527672
- Matching level: species
strain history
- @ref: 67770
- history: P. Bhadury; Indian Inst. of Sci. Edu. & Res. Kolkata, India; Iso1.
doi: 10.13145/bacdive164526.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio chemaguriensis
- full scientific name: Vibrio chemaguriensis Ghosh and Bhadury 2019
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio chemaguriensis
full scientific name: Vibrio chemaguriensis Ghosh et al.
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 32
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chemaguri creek in Sundarbans
- country: India
- origin.country: IND
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_89.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_74;98_81;99_89&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: MG356329
- Sequence Identity:
- Total samples: 5164
- soil counts: 169
- aquatic counts: 3075
- animal counts: 1856
- plant counts: 64
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio chemaguriensis strain Iso1 16S ribosomal RNA gene, partial sequence
- accession: MG356329
- length: 1454
- database: ena
- NCBI tax ID: 2527672
Genome sequences
- @ref: 67770
- description: Vibrio chemaguriensis Iso1
- accession: GCA_012275705
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2527672
GC content
- @ref: 67770
- GC-content: 44.9
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 91.072 | no |
| flagellated | yes | 89.013 | no |
| gram-positive | no | 98.215 | no |
| anaerobic | no | 97.048 | no |
| aerobic | yes | 88.582 | no |
| halophile | yes | 52.191 | no |
| spore-forming | no | 94.078 | no |
| glucose-util | yes | 89.904 | no |
| thermophile | no | 99.533 | no |
| glucose-ferment | yes | 88.301 | no |
External links
@ref: 67770
culture collection no.: JCM 33348, MTCC 12900
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |