Strain identifier
BacDive ID: 164521
Type strain: 
Species: Amaricoccus solimangrovi
Strain history: K. Mo; CATAS, China; HB172011.
NCBI tax ID(s): 2589815 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164521
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Amaricoccus solimangrovi JCM 33334 is a mesophilic bacterium that was isolated from Mangrove sediment from Bamen Bay mangrove forest.
NCBI tax id
- NCBI tax id: 2589815
- Matching level: species
strain history
- @ref: 67770
- history: K. Mo; CATAS, China; HB172011.
doi: 10.13145/bacdive164521.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Amaricoccus
- species: Amaricoccus solimangrovi
- full scientific name: Amaricoccus solimangrovi Mo et al. 2020
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Amaricoccus
species: Amaricoccus solimangrovi
full scientific name: Amaricoccus solimangrovi Mo et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Mangrove sediment from Bamen Bay mangrove forest
- geographic location: Hainan
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Amaricoccus sp. strain HB172011 16S ribosomal RNA gene, partial sequence
- accession: MK253262
- length: 1425
- database: ena
- NCBI tax ID: 2589815
Genome sequences
- @ref: 67770
- description: Amaricoccus solimangrovi HB172011
- accession: GCA_006385685
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2589815
GC content
- @ref: 67770
- GC-content: 69.9
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 60.275 | no |
| flagellated | no | 88.918 | no |
| gram-positive | no | 97.926 | no |
| anaerobic | no | 97.878 | no |
| aerobic | yes | 91.628 | no |
| halophile | no | 74.728 | no |
| spore-forming | no | 95.592 | no |
| thermophile | no | 94.333 | no |
| glucose-util | yes | 89.414 | no |
| glucose-ferment | no | 90.713 | no |
External links
@ref: 67770
culture collection no.: JCM 33334, CGMCC 1.16728
literature
- topic: Phylogeny
- Pubmed-ID: 32853132
- title: Amaricoccus solimangrovi sp. nov., isolated from mangrove soil.
- authors: Mo KL, Huang HQ, Wu QJ, Hu YH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004420
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, *Wetlands
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |