Strain identifier
BacDive ID: 164514
Type strain: 
Species: Roseomonas algicola
Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; PeD5.
NCBI tax ID(s): 2716930 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164514
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Roseomonas algicola JCM 33309 is a mesophilic, Gram-negative bacterium that was isolated from Green alga, Pediastrum duplex, from the Nakdong river.
NCBI tax id
- NCBI tax id: 2716930
- Matching level: species
strain history
- @ref: 67770
- history: C. O. Jeon; Chung-Ang Univ., South Korea; PeD5.
doi: 10.13145/bacdive164514.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas algicola
- full scientific name: Roseomonas algicola Kim et al. 2020
synonyms
- @ref: 20215
- synonym: Falsiroseomonas algicola
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas algicola
full scientific name: Roseomonas algicola Kim et al. 2020
type strain: yes
Morphology
cell morphology
- @ref: 125438
- gram stain: negative
- confidence: 97.31
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 35
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 93.6
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Green alga, Pediastrum duplex, from the Nakdong river
- host species: Pediastrum duplex
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Falsiroseomonas algicola strain PeD5 16S ribosomal RNA gene, partial sequence
- accession: MK342491
- length: 1419
- database: nuccore
- NCBI tax ID: 2716930
Genome sequences
- @ref: 67770
- description: Falsiroseomonas algicola PeD5
- accession: GCA_011040385
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2716930
GC content
- @ref: 67770
- GC-content: 71
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.31 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.624 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.162 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 72.603 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.385 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 70.565 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 74.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 54 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 75.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 93.6 |
External links
@ref: 67770
culture collection no.: JCM 33309, KACC 19925
literature
- topic: Phylogeny
- Pubmed-ID: 32924923
- title: Roseomonas algicola sp. nov., isolated from a green alga, Pediastrum duplex.
- authors: Kim HM, Khan SA, Han DM, Chun BH, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004454
- year: 2020
- mesh: Acetobacteraceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Chlorophyceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |