Strain identifier
BacDive ID: 164514
Type strain: 
Species: Roseomonas algicola
Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; PeD5.
NCBI tax ID(s): 2716930 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164514
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Roseomonas algicola JCM 33309 is a mesophilic bacterium that was isolated from Green alga, Pediastrum duplex, from the Nakdong river.
NCBI tax id
- NCBI tax id: 2716930
- Matching level: species
strain history
- @ref: 67770
- history: C. O. Jeon; Chung-Ang Univ., South Korea; PeD5.
doi: 10.13145/bacdive164514.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas algicola
- full scientific name: Roseomonas algicola Kim et al. 2020
synonyms
- @ref: 20215
- synonym: Falsiroseomonas algicola
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas algicola
full scientific name: Roseomonas algicola Kim et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Green alga, Pediastrum duplex, from the Nakdong river
- host species: Pediastrum duplex
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Roseomonas sp. strain PeD5 16S ribosomal RNA gene, partial sequence
- accession: MK342491
- length: 1419
- database: ena
- NCBI tax ID: 2716930
Genome sequences
- @ref: 67770
- description: Falsiroseomonas algicola PeD5
- accession: GCA_011040385
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2716930
GC content
- @ref: 67770
- GC-content: 71
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 57.528 | no |
| flagellated | no | 81.516 | no |
| gram-positive | no | 98.399 | no |
| anaerobic | no | 98.425 | no |
| aerobic | yes | 92.957 | no |
| halophile | no | 88.341 | no |
| spore-forming | no | 94.957 | no |
| thermophile | no | 97.204 | yes |
| glucose-util | yes | 81.973 | no |
| glucose-ferment | no | 90.074 | no |
External links
@ref: 67770
culture collection no.: JCM 33309, KACC 19925
literature
- topic: Phylogeny
- Pubmed-ID: 32924923
- title: Roseomonas algicola sp. nov., isolated from a green alga, Pediastrum duplex.
- authors: Kim HM, Khan SA, Han DM, Chun BH, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004454
- year: 2020
- mesh: Acetobacteraceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Chlorophyceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |