Strain identifier
BacDive ID: 164506
Type strain: 
Species: Hydrogeniiclostridium mannosilyticum
Strain history: V. Shcherbakova; VKM, Russia; ASD2818.
NCBI tax ID(s): 2764322 (species)
General
@ref: 67770
BacDive-ID: 164506
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Hydrogeniiclostridium mannosilyticum JCM 33295 is a mesophilic bacterium that was isolated from Feces from a healthy 3-year-old boy living in Moscow.
NCBI tax id
- NCBI tax id: 2764322
- Matching level: species
strain history
- @ref: 67770
- history: V. Shcherbakova; VKM, Russia; ASD2818.
doi: 10.13145/bacdive164506.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Hydrogeniiclostridium
- species: Hydrogeniiclostridium mannosilyticum
- full scientific name: Hydrogeniiclostridium mannosilyticum corrig. Chaplin et al. 2020
synonyms
- @ref: 20215
- synonym: Hydrogeniiclostidium mannosilyticum
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Oscillospiraceae
genus: Hydrogeniiclostidium
species: Hydrogeniiclostidium mannosilyticum
full scientific name: Hydrogeniiclostidium mannosilyticum Chaplin et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Feces from a healthy 3-year-old boy living in Moscow
taxonmaps
- @ref: 69479
- File name: preview.99_92881.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_229;96_38264;97_48690;98_63912;99_92881&stattab=map
- Last taxonomy: Hydrogeniiclostidium mannosilyticum subclade
- 16S sequence: MH043116
- Sequence Identity:
- Total samples: 7329
- soil counts: 13
- aquatic counts: 167
- animal counts: 7146
- plant counts: 3
Sequence information
16S sequences
- @ref: 67770
- description: Ruminococcaceae bacterium strain ASD2818 16S ribosomal RNA gene, partial sequence
- accession: MH043116
- length: 1536
- database: ena
- NCBI tax ID: 2764322
Genome sequences
- @ref: 67770
- description: Hydrogeniiclostridium mannosilyticum ASD2818
- accession: GCA_003268275
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2764322
GC content
- @ref: 67770
- GC-content: 52.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.427 | no |
| flagellated | no | 96.784 | no |
| gram-positive | yes | 93.449 | no |
| anaerobic | yes | 99.616 | no |
| aerobic | no | 98.741 | no |
| halophile | no | 88.512 | no |
| spore-forming | no | 79.151 | no |
| glucose-util | yes | 84.295 | no |
| thermophile | no | 94.77 | no |
| glucose-ferment | yes | 70.559 | no |
External links
@ref: 67770
culture collection no.: JCM 33295, VKM B-3268
literature
- topic: Phylogeny
- Pubmed-ID: 32122456
- title: Hydrogeniiclostidium mannosilyticum gen. nov., sp. nov. isolated from human faeces.
- authors: Chaplin AV, Sokolova SR, Shcherbakova VA, Suzina NE, Kochetkova TO, Goltsov AY, Trofimov DY, Efimov BA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003900
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Child, Preschool, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, Male, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |