Strain identifier
BacDive ID: 164446
Type strain: 
Species: Mucilaginibacter terrigena
Strain history: H.-Y. Jung; Kyungpook Natl. Univ., South Korea; 17JY9-4.
NCBI tax ID(s): 2492395 (species)
General
@ref: 67770
BacDive-ID: 164446
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mucilaginibacter terrigena JCM 33049 is a mesophilic bacterium that was isolated from Soil sample collected on Jeju Island.
NCBI tax id
- NCBI tax id: 2492395
- Matching level: species
strain history
- @ref: 67770
- history: H.-Y. Jung; Kyungpook Natl. Univ., South Korea; 17JY9-4.
doi: 10.13145/bacdive164446.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Mucilaginibacter
- species: Mucilaginibacter terrigena
- full scientific name: Mucilaginibacter terrigena Ten et al. 2020
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Mucilaginibacter
species: Mucilaginibacter terrigena
full scientific name: Mucilaginibacter terrigena Ten et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil sample collected on Jeju Island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Mucilaginibacter sp. 17JY9-4 gene for 16S ribosomal RNA, partial sequence
- accession: LC434629
- length: 1455
- database: ena
- NCBI tax ID: 2492395
Genome sequences
- @ref: 67770
- description: Mucilaginibacter terrigena 17JY9-4
- accession: GCA_004168255
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2492395
GC content
- @ref: 67770
- GC-content: 44.38
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.949 | no |
| gram-positive | no | 96.857 | no |
| anaerobic | no | 99.228 | no |
| aerobic | yes | 89.093 | no |
| halophile | no | 95.02 | no |
| spore-forming | no | 94.637 | no |
| glucose-util | yes | 84.226 | no |
| thermophile | no | 97.53 | yes |
| motile | no | 90.941 | no |
| glucose-ferment | no | 91.046 | no |
External links
@ref: 67770
culture collection no.: JCM 33049, KCTC 62294
literature
- topic: Phylogeny
- Pubmed-ID: 31350573
- title: Mucilaginibacter terrigena sp. nov. sp., A Novel Member of the Family Sphingobacteriaceae.
- authors: Ten LN, Jeon NY, Li W, Cho YJ, Kim MK, Lee SY, Rooney AP, Jung HY
- journal: Curr Microbiol
- DOI: 10.1007/s00284-019-01748-y
- year: 2019
- mesh: Bacteroidetes/chemistry/*classification/*physiology, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genome, Bacterial/genetics, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil Microbiology, Species Specificity, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |