Strain identifier
BacDive ID: 16443
Type strain: 
Species: Streptomyces murinus
Strain Designation: TÜ 38
Strain history: <- H. Zähner, Tü 38 <- ETH, 20388
NCBI tax ID(s): 33900 (species)
version 8.1 (current version)
General
@ref: 9714
BacDive-ID: 16443
DSM-Number: 40710
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces murinus TÜ 38 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 33900
- Matching level: species
strain history
- @ref: 9714
- history: <- H. Zähner, Tü 38 <- ETH, 20388
doi: 10.13145/bacdive16443.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces murinus
- full scientific name: Streptomyces murinus Frommer 1959 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptomyces costaricanus 20215 Streptomyces griseofuscus 20215 Streptomyces phaeogriseichromatogenes
@ref: 9714
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces phaeogriseichromatogenes
full scientific name: Streptomyces phaeogriseichromatogenes Goodfellow et al. 2008
strain designation: TÜ 38
type strain: yes
Culture and growth conditions
culture medium
- @ref: 9714
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 9714
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 9714 | lankamycidin |
| 9714 | lankamycin |
| 9714 | lankacidin |
Isolation, sampling and environmental information
isolation
- @ref: 9714
- sample type: soil
- geographic location: Ceylon, Pantiya
- country: Sri Lanka
- origin.country: LKA
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3145.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_224;98_2413;99_3145&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AJ391813
- Sequence Identity:
- Total samples: 462
- soil counts: 384
- aquatic counts: 10
- animal counts: 13
- plant counts: 55
Safety information
risk assessment
- @ref: 9714
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Streptomyces phaeogriseichromatogenes partial 16S rRNA gene, type strain NRRL 2834T
- accession: AJ391813
- length: 1341
- database: ena
- NCBI tax ID: 114684
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces murinus DSM 40710 | GCA_014138905 | contig | ncbi | 33900 |
| 66792 | Streptomyces phaeogriseichromatogenes strain DSM 40710 | 114684.3 | wgs | patric | 33900 |
| 66792 | Streptomyces phaeogriseichromatogenes DSM 40710 | 2873306619 | draft | img | 114684 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 94.751 | no |
| flagellated | no | 98.026 | no |
| gram-positive | yes | 90.691 | no |
| anaerobic | no | 98.791 | no |
| aerobic | yes | 90.868 | no |
| halophile | no | 94.238 | no |
| spore-forming | yes | 95.981 | no |
| glucose-util | yes | 87.906 | no |
| thermophile | no | 96.27 | yes |
| glucose-ferment | no | 90.553 | no |
External links
@ref: 9714
culture collection no.: DSM 40710, NRRL 2834, ETH 20388
straininfo link
- @ref: 85480
- straininfo: 49757
literature
- topic: Phylogeny
- Pubmed-ID: 17407000
- title: The Streptomyces violaceusniger clade: a home for Streptomycetes with rugose ornamented spores.
- authors: Goodfellow M, Kumar Y, Labeda DP, Sembiring L
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-007-9146-6
- year: 2007
- mesh: Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Spores, Bacterial/*cytology, Streptomyces/*classification/*cytology/genetics
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9714 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40710) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40710 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85480 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49757.1 | StrainInfo: A central database for resolving microbial strain identifiers |