Strain identifier
BacDive ID: 164406
Type strain: 
Species: Amnibacterium setariae
Strain history: T. Seo; Dongguk Univ., South Korea; DD4a.
NCBI tax ID(s): 2306585 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164406
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Amnibacterium setariae JCM 32878 is a mesophilic bacterium that was isolated from Dried yellow foxtail plant .
NCBI tax id
- NCBI tax id: 2306585
- Matching level: species
strain history
- @ref: 67770
- history: T. Seo; Dongguk Univ., South Korea; DD4a.
doi: 10.13145/bacdive164406.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Amnibacterium
- species: Amnibacterium setariae
- full scientific name: Amnibacterium setariae Kim et al. 2021
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Microbacteriaceae
genus: Amnibacterium
species: Amnibacterium setariae
full scientific name: Amnibacterium setariae Kim et al. 2021
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-11, MK-12
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Dried yellow foxtail plant (Setaria sp.)
- host species: Setaria sp.
- geographic location: Goyang-si
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Amnibacterium setariae 16S ribosomal RNA gene, partial sequence
- accession: MH161601
- length: 1441
- database: ena
- NCBI tax ID: 2306585
Genome sequences
- @ref: 67770
- description: Amnibacterium setariae DD4a
- accession: GCA_003581425
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2306585
GC content
- @ref: 67770
- GC-content: 73.9
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 55.017 | no |
| flagellated | no | 94.106 | no |
| gram-positive | yes | 87.297 | no |
| anaerobic | no | 99.389 | no |
| aerobic | yes | 91.18 | no |
| halophile | no | 93.477 | no |
| spore-forming | no | 93.717 | no |
| glucose-util | yes | 80.28 | no |
| thermophile | no | 99.046 | yes |
| glucose-ferment | no | 89.125 | no |
External links
@ref: 67770
culture collection no.: JCM 32878, KACC 19817
literature
- topic: Phylogeny
- Pubmed-ID: 31332634
- title: Amnibacterium setariae sp. nov., an endophytic actinobacterium isolated from dried foxtail.
- authors: Kim I, Chhetri G, Kim J, Seo T
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-019-01302-7
- year: 2019
- mesh: Actinobacteria/*classification/genetics/*isolation & purification, Aerobiosis, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Endophytes/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Glycolipids/analysis, Locomotion, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Setaria Plant/*microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |