Strain identifier

BacDive ID: 164332

Type strain: Yes

Species: Vibrio aquaticus

Strain history: M. Yu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; BEI207.

NCBI tax ID(s): 2496559 (species)

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General

@ref: 67770

BacDive-ID: 164332

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Vibrio aquaticus JCM 32691 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Bottom seawater at a depth of 50.0 m in the East China Sea.

NCBI tax id

  • NCBI tax id: 2496559
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. Yu; Coll. of Mar. Life Sci., Ocean Univ. of China, China; BEI207.

doi: 10.13145/bacdive164332.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio aquaticus
  • full scientific name: Vibrio aquaticus Li et al. 2020

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio aquaticus

full scientific name: Vibrio aquaticus Li et al. 2020

type strain: yes

Morphology

cell morphology

  • @ref: 69504
  • gram stain: negative
  • cell length: 1.2-2.1 µm
  • cell width: 0.4-0.8 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 69504
  • colony size: 0.1-1.0 mm
  • colony color: opaque cream
  • colony shape: circular
  • incubation period: 1.5 days
  • medium used: Marine agar (MA)

Culture and growth conditions

culture medium

@refnamegrowth
69504Marine agar (MA)yes
69504TCBSyes

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth28mesophilic
69504positivegrowth10.0-37.0
69504positiveoptimum28mesophilic

culture pH

@refabilitytypepH
69504positivegrowth6.0-9.5
69504positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 69504
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 69504
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
69504NaClpositivegrowth1.0-7.0 %(w/v)
69504NaClpositiveoptimum2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6950458187alginate-hydrolysis
6950485146carboxymethylcellulose-hydrolysis
69504casein-hydrolysis
6950453426tween 80-hydrolysis
6950416651(S)-lactate+carbon source
69504167632-oxobutanoate+carbon source
69504739183-methylglucose+carbon source
6950430089acetate+carbon source
6950413705acetoacetate+carbon source
6950417925alpha-D-glucose+carbon source
6950417057cellobiose+carbon source
6950415824D-fructose+carbon source
6950478697D-fructose 6-phosphate+carbon source
6950428847D-fucose+carbon source
6950415895D-galactonic acid lactone+carbon source
6950412936D-galactose+carbon source
6950414314D-glucose 6-phosphate+carbon source
6950415748D-glucuronate+carbon source
6950416899D-mannitol+carbon source
6950416024D-mannose+carbon source
6950417814D-salicin+carbon source
6950416523D-serine+carbon source
6950417924D-sorbitol+carbon source
695045291gelatin+carbon source
6950428066gentiobiose+carbon source
6950432323glucuronamide+carbon source
6950417754glycerol+carbon source
6950417596inosine+carbon source
6950416977L-alanine+carbon source
6950416467L-arginine+carbon source
6950429991L-aspartate+carbon source
6950418287L-fucose+carbon source
6950417464L-galactonic acid gamma-lactone+carbon source
6950429985L-glutamate+carbon source
6950415589L-malate+carbon source
6950462345L-rhamnose+carbon source
6950417115L-serine+carbon source
6950417306maltose+carbon source
6950428053melibiose+carbon source
69504320055methyl beta-D-glucopyranoside+carbon source
6950417268myo-inositol+carbon source
6950463154N-acetyl-beta-D-mannosamine+carbon source
6950428037n-acetyl-D-galactosamine+carbon source
69504506227N-acetyl-D-glucosamine+carbon source
69504n-acetyl-neuraminic acid+carbon source
6950417309pectin+carbon source
6950417164stachyose+carbon source
6950417992sucrose+carbon source
6950427082trehalose+carbon source
6950432528turanose+carbon source
6950453423tween 40+carbon source
6950427613amygdalin+fermentation
6950417634D-glucose+fermentation
6950416899D-mannitol+fermentation
6950417029chitin+hydrolysis
6950416991dna+hydrolysis
695045291gelatin+hydrolysis
6950453424tween 20+hydrolysis
6950453423tween 40+hydrolysis
6950417634D-glucose+oxidation
6950416899D-mannitol+oxidation
6950435581indole+
6950417632nitrate+/-reduction

metabolite production

  • @ref: 69504
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
69504cytochrome oxidase+1.9.3.1
69504catalase+1.11.1.6
69504alkaline phosphatase+3.1.3.1
69504esterase (C 4)+
69504leucine arylamidase+3.4.11.1
69504alpha-galactosidase+3.2.1.22
69504esterase Lipase (C 8)-
69504lipase (C 14)-
69504valine arylamidase-
69504cystine arylamidase-3.4.11.3
69504trypsin-3.4.21.4
69504alpha-chymotrypsin-3.4.21.1
69504acid phosphatase-3.1.3.2
69504naphthol-AS-BI-phosphohydrolase-
69504beta-galactosidase-3.2.1.23
69504beta-glucuronidase-3.2.1.31
69504alpha-glucosidase-3.2.1.20
69504beta-glucosidase-3.2.1.21
69504N-acetyl-beta-glucosaminidase-3.2.1.52
69504alpha-mannosidase-3.2.1.24
69504alpha-fucosidase-3.2.1.51
69504arginine dihydrolase+3.5.3.6
69504tryptophan deaminase+4.1.99.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
67770Bottom seawater at a depth of 50.0 m in the East China Sea
69504Sea water sample, depth 50.0mEast China SeaChinaCHNAsia27.24121.33MA 2216E2days28streaking three times

Sequence information

16S sequences

  • @ref: 67770
  • description: Vibrio sp. strain BEI207 16S ribosomal RNA gene, partial sequence
  • accession: MG754467
  • length: 1542
  • database: ena
  • NCBI tax ID: 2496559

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
67770Vibrio aquaticus BEI207GCA_003970385contigncbi2496559
69504genome sequenceRXZH01000000ncbi2496559

GC content

  • @ref: 67770
  • GC-content: 45.06
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.426no
flagellatedyes89.405no
gram-positiveno98.779no
anaerobicno95.931no
aerobicyes83.961no
halophileyes60.611no
spore-formingno93.361no
thermophileno99.247yes
glucose-utilyes90.21no
glucose-fermentyes88.197no

External links

@ref: 67770

culture collection no.: JCM 32691, KCTC 62617, MCCC 1K03516, BEI 207

literature

  • topic: Phylogeny
  • Pubmed-ID: 31622230
  • title: Vibrio ouci sp. nov. and Vibrio aquaticus sp. nov., two marine bacteria isolated from the East China Sea.
  • authors: Li B, Li Y, Liu R, Xue C, Zhu X, Tian X, Wang X, Liang J, Zheng Y, Zhang XH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003732
  • year: 2020
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vibrio/*classification/isolation & purification, *Water Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69504Hayoung Cho, Jun Heo, Moriyuki Hamada, Tomohiko Tamura, Satomi Saitou, Jeong-Seon Kim, Seung-Beom Hong, Soo-Jin Kim, Soon-Wo KwonVibrio ouci sp. nov. and Vibrio aquaticus sp. nov., two marine bacteria isolated from the East China Sea10.1099/ijsem.0.003732