Archive BacDiveID:10.13145/bacdive164327.20230509.8.1

Strain identifier

BacDive ID: 164327

Type strain:

Species: Alteromonas portus

Strain history: H. Huang; CATAS, China; HB161718.

NCBI tax ID(s): 2565549 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 164327

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Alteromonas portus JCM 32687 is a mesophilic bacterium that was isolated from Coastal sand from Tanmen Port in Hainan.

NCBI tax id

NCBI tax id: 2565549
Matching level: species

strain history

@ref: 67770
history: H. Huang; CATAS, China; HB161718.

doi: 10.13145/bacdive164327.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Alteromonas
species: Alteromonas portus
full scientific name: Alteromonas portus Huang et al. 2020

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas portus

full scientific name: Alteromonas portus Huang et al. 2020

type strain: yes

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 30
range: mesophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Coastal sand from Tanmen Port in Hainan
country: China
origin.country: CHN
continent: Asia

taxonmaps

@ref: 69479
File name: preview.99_508.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_285;98_318;99_508&stattab=map
Last taxonomy: Alteromonas
16S sequence: MG994978
Sequence Identity:
Total samples: 5812
soil counts: 47
aquatic counts: 5573
animal counts: 164
plant counts: 28

Sequence information

16S sequences

@ref: 67770
description: Alteromonas sp. strain HB161718 16S ribosomal RNA gene, partial sequence
accession: MG994978
length: 1455
database: ena
NCBI tax ID: 2565549

Genome sequences

@ref: 67770
description: Alteromonas portus HB161718
accession: GCA_005117025
assembly level: contig
database: ncbi
NCBI tax ID: 2565549

GC content

@ref: 67770
GC-content: 44.1
method: genome sequence analysis

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	yes	91.325	no
gram-positive	no	98.783	no
anaerobic	no	97.734	no
aerobic	yes	91.442	no
halophile	yes	72.712	no
spore-forming	no	96.852	no
glucose-util	yes	88.04	no
thermophile	no	99.691	yes
motile	yes	88.884	no
glucose-ferment	no	86.211	no

External links

@ref: 67770

culture collection no.: JCM 32687, CGMCC 1.13585

literature

topic: Phylogeny
Pubmed-ID: 31935177
title: Alteromonas portus sp. nov., an alginate lyase-excreting marine bacterium.
authors: Huang H, Mo K, Li S, Dongmei S, Zhu J, Zou X, Hu Y, Bao S
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.003884
year: 2020
mesh: Alteromonas/*classification/enzymology/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, *Polysaccharide-Lyases, RNA, Ribosomal, 16S/genetics, Sand/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
topic2: Enzymology

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/