Strain identifier
BacDive ID: 16429
Type strain: 
Species: Streptomyces guanduensis
Strain Designation: 701
Strain history: Y. Huang 701.
NCBI tax ID(s): 310781 (species)
version 9.1 (current version)
General
@ref: 15747
BacDive-ID: 16429
DSM-Number: 41944
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped
description: Streptomyces guanduensis 701 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Dashao pine-forest soil.
NCBI tax id
- NCBI tax id: 310781
- Matching level: species
strain history
| @ref | history |
|---|---|
| 15747 | <- CGMCC; CGMCC 4.2022 |
| 67770 | Y. Huang 701. |
doi: 10.13145/bacdive16429.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces guanduensis
- full scientific name: Streptomyces guanduensis Xu et al. 2006
synonyms
- @ref: 20215
- synonym: Actinacidiphila guanduensis
@ref: 15747
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces guanduensis
full scientific name: Streptomyces guanduensis Xu et al. 2006
strain designation: 701
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 31645 | positive | rod-shaped | no | |
| 69480 | positive | 91.574 |
pigmentation
- @ref: 31645
- production: yes
multimedia
- @ref: 15747
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41944.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 15747 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
| 15747 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 15747 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 15747 | positive | growth | 28 |
| 31645 | positive | growth | 20-37 |
| 31645 | positive | optimum | 30-37 |
| 67770 | positive | growth | 28 |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31645 | positive | growth | 4.5-7 |
| 31645 | positive | optimum | 06-07 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 31645 | aerobe | |
| 69480 | aerobe | 91.527 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 31645 | yes | |
| 69480 | yes | 91.878 |
| 69481 | yes | 100 |
observation
| @ref | observation |
|---|---|
| 31645 | aggregates in chains |
| 67770 | quinones: MK-9(H6), MK-9(H8) |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31645 | 17128 | adipate | + | carbon source |
| 31645 | 17057 | cellobiose | + | carbon source |
| 31645 | 28260 | galactose | + | carbon source |
| 31645 | 17234 | glucose | + | carbon source |
| 31645 | 17716 | lactose | + | carbon source |
| 31645 | 29864 | mannitol | + | carbon source |
| 31645 | 28044 | phenylalanine | + | carbon source |
| 31645 | 17814 | salicin | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15747 | Dashao pine-forest soil | Guandu, Yunnan Province | China | CHN | Asia |
| 67770 | Dashao pine-forest soil | Guandu, Yunnan Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Tree |
Safety information
risk assessment
- @ref: 15747
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15747
- description: Streptomyces guanduensis strain 701 16S ribosomal RNA gene, partial sequence
- accession: AY876942
- length: 1447
- database: nuccore
- NCBI tax ID: 310781
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces guanduensis strain CGMCC 4.2022 | 310781.4 | wgs | patric | 310781 |
| 66792 | Streptomyces guanduensis CGMCC 4.2022 | 2667527439 | draft | img | 310781 |
| 67770 | Actinacidiphila guanduensis CGMCC 4.2022 | GCA_900103985 | scaffold | ncbi | 310781 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 15747 | 72.7 | |
| 67770 | 72.7 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.574 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.492 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 91.878 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.527 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.4 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.5 | no |
External links
@ref: 15747
culture collection no.: DSM 41944, CGMCC 4.2022, JCM 13274, CIP 109258, NBRC 102070
straininfo link
- @ref: 85470
- straininfo: 291002
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16627663 | Neutrotolerant acidophilic Streptomyces species isolated from acidic soils in China: Streptomyces guanduensis sp. nov., Streptomyces paucisporeus sp. nov., Streptomyces rubidus sp. nov. and Streptomyces yanglinensis sp. nov. | Xu C, Wang L, Cui Q, Huang Y, Liu Z, Zheng G, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.63959-0 | 2006 | Bacterial Typing Techniques, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/cytology/*isolation & purification/physiology | Genetics |
| Phylogeny | 34214026 | Streptomyces acididurans sp. nov., isolated from peat swamp forest soil. | Chantavorakit T, Klaysubun C, Duangmal K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004849 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *Wetlands | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 15747 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41944) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41944 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 31645 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27928 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 85470 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID291002.1 | StrainInfo: A central database for resolving microbial strain identifiers |