Strain identifier

BacDive ID: 16429

Type strain: Yes

Species: Streptomyces guanduensis

Strain Designation: 701

Strain history: Y. Huang 701.

NCBI tax ID(s): 310781 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15747

BacDive-ID: 16429

DSM-Number: 41944

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Streptomyces guanduensis 701 is an aerobe, spore-forming, mesophilic bacterium that was isolated from Dashao pine-forest soil.

NCBI tax id

  • NCBI tax id: 310781
  • Matching level: species

strain history

@refhistory
15747<- CGMCC; CGMCC 4.2022
67770Y. Huang 701.

doi: 10.13145/bacdive16429.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces guanduensis
  • full scientific name: Streptomyces guanduensis Xu et al. 2006
  • synonyms

    • @ref: 20215
    • synonym: Actinacidiphila guanduensis

@ref: 15747

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces guanduensis

full scientific name: Streptomyces guanduensis Xu et al. 2006

strain designation: 701

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31645positiverod-shapedno
69480no90.813
69480positive100

pigmentation

  • @ref: 31645
  • production: yes

multimedia

  • @ref: 15747
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41944.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15747STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
15747ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
15747GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

@refgrowthtypetemperaturerange
15747positivegrowth28mesophilic
31645positivegrowth20-37
31645positiveoptimum30-37mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepH
31645positivegrowth4.5-7
31645positiveoptimum06-07

Physiology and metabolism

oxygen tolerance

  • @ref: 31645
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31645yes
69481yes100
69480yes100

observation

@refobservation
31645aggregates in chains
67770quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3164517128adipate+carbon source
3164517057cellobiose+carbon source
3164528260galactose+carbon source
3164517234glucose+carbon source
3164517716lactose+carbon source
3164529864mannitol+carbon source
3164528044phenylalanine+carbon source
3164517814salicin+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15747Dashao pine-forest soilGuandu, Yunnan ProvinceChinaCHNAsia
67770Dashao pine-forest soilGuandu, Yunnan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 15747
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15747
  • description: Streptomyces guanduensis strain 701 16S ribosomal RNA gene, partial sequence
  • accession: AY876942
  • length: 1447
  • database: ena
  • NCBI tax ID: 310781

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces guanduensis strain CGMCC 4.2022310781.4wgspatric310781
66792Streptomyces guanduensis CGMCC 4.20222667527439draftimg310781
67770Actinacidiphila guanduensis CGMCC 4.2022GCA_900103985scaffoldncbi310781

GC content

@refGC-contentmethod
1574772.7
6777072.7thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes91.546yes
anaerobicno98.976no
halophileno95.158no
spore-formingyes94.112yes
glucose-utilyes89.18yes
motileno93.907yes
flagellatedno98.27no
aerobicyes93.482yes
thermophileno97.732yes
glucose-fermentno87.603no

External links

@ref: 15747

culture collection no.: DSM 41944, CGMCC 4.2022, JCM 13274, CIP 109258, NBRC 102070

straininfo link

  • @ref: 85470
  • straininfo: 291002

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16627663Neutrotolerant acidophilic Streptomyces species isolated from acidic soils in China: Streptomyces guanduensis sp. nov., Streptomyces paucisporeus sp. nov., Streptomyces rubidus sp. nov. and Streptomyces yanglinensis sp. nov.Xu C, Wang L, Cui Q, Huang Y, Liu Z, Zheng G, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.63959-02006Bacterial Typing Techniques, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/cytology/*isolation & purification/physiologyGenetics
Phylogeny34214026Streptomyces acididurans sp. nov., isolated from peat swamp forest soil.Chantavorakit T, Klaysubun C, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0048492021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
15747Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41944)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41944
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31645Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2792828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85470Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID291002.1StrainInfo: A central database for resolving microbial strain identifiers