Strain identifier
BacDive ID: 164278
Type strain: 
Species: Paenibacillus solisilvae
Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM7113.
NCBI tax ID(s): 2486751 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164278
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Paenibacillus solisilvae JCM 32513 is a mesophilic bacterium that was isolated from Birch forest soil.
NCBI tax id
- NCBI tax id: 2486751
- Matching level: species
strain history
- @ref: 67770
- history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM7113.
doi: 10.13145/bacdive164278.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus solisilvae
- full scientific name: Paenibacillus solisilvae Kong et al. 2020
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus solisilvae
full scientific name: Paenibacillus solisilvae Kong et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Birch forest soil
- geographic location: Xinjiang Uygur Autonomous Region
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Paenibacillus sp. strain LAAM7113 16S ribosomal RNA gene, partial sequence
- accession: MF784349
- length: 1515
- database: ena
- NCBI tax ID: 58172
Genome sequences
- @ref: 67770
- description: Paenibacillus solisilvae LAM7113
- accession: GCA_003999915
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2486751
GC content
- @ref: 67770
- GC-content: 43.4
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.792 | no |
| flagellated | yes | 88.307 | no |
| gram-positive | yes | 91.889 | no |
| anaerobic | no | 99.277 | no |
| aerobic | yes | 90.226 | no |
| halophile | yes | 84.907 | no |
| spore-forming | yes | 96.928 | no |
| thermophile | no | 97.392 | no |
| glucose-util | yes | 88.12 | no |
| glucose-ferment | no | 90.867 | no |
External links
@ref: 67770
culture collection no.: JCM 32513, CGMCC 1.16619
literature
- topic: Phylogeny
- Pubmed-ID: 32293556
- title: Paenibacillus solisilvae sp. nov., isolated from birch forest soil.
- authors: Kong D, Zhang Q, Jiang X, Ma Q, Han X, Zhou Y, Xue H, Zhang Y, Zhang W, Ruan Z
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004093
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, *Betula, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Forests, Glycolipids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |