Strain identifier
BacDive ID: 164273
Type strain: 
Species: Natrarchaeobius halalkaliphilus
Strain history: D. Y. Sorokin; Dept. of Biotechnol., TU Delft, Netherlands; AArcht-Sl.
NCBI tax ID(s): 1679091 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164273
keywords: genome sequence, Archaea, mesophilic, Gram-negative
description: Natrarchaeobius halalkaliphilus JCM 32477 is a mesophilic, Gram-negative archaeon that was isolated from Alkaline hypersaline Searles Lake.
NCBI tax id
- NCBI tax id: 1679091
- Matching level: species
strain history
- @ref: 67770
- history: D. Y. Sorokin; Dept. of Biotechnol., TU Delft, Netherlands; AArcht-Sl.
doi: 10.13145/bacdive164273.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Natrarchaeobius
- species: Natrarchaeobius halalkaliphilus
- full scientific name: Natrarchaeobius halalkaliphilus corrig. Sorokin et al. 2020
synonyms
- @ref: 20215
- synonym: Natrarchaeobius haloalkaliphilus
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Natrialbales
family: Natrialbaceae
genus: Natrarchaeobius
species: Natrarchaeobius halalkaliphilus
full scientific name: Natrarchaeobius halalkaliphilus Sorokin et al.
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.935
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.975 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Alkaline hypersaline Searles Lake
- geographic location: California
- country: USA
- origin.country: USA
- continent: North America
Sequence information
Genome sequences
- @ref: 67770
- description: Natrarchaeobius halalkaliphilus AArcht-Sl
- accession: GCA_003841485
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1679091
GC content
- @ref: 67770
- GC-content: 61.1
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 80.235 | no |
| flagellated | no | 96.619 | no |
| gram-positive | no | 96.887 | no |
| anaerobic | no | 94.74 | no |
| aerobic | yes | 81.236 | no |
| halophile | yes | 80.322 | no |
| spore-forming | no | 91.945 | no |
| thermophile | no | 84.355 | yes |
| glucose-util | yes | 89.398 | no |
| glucose-ferment | no | 83.961 | no |
External links
@ref: 67770
culture collection no.: JCM 32477, UNIQEM U969
literature
- topic: Phylogeny
- Pubmed-ID: 30638904
- title: Natrarchaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius halalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes.
- authors: Sorokin DY, Elcheninov AG, Toshchakov SV, Bale NJ, Sinninghe Damste JS, Khijniak TV, Kublanov IV
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2019.01.001
- year: 2019
- mesh: Bacterial Proteins/genetics, Chitin/*metabolism, DNA, Bacterial/genetics, Euryarchaeota/chemistry/*classification/genetics/*physiology, Genome, Bacterial/genetics, Hydrogen-Ion Concentration, Lakes/*microbiology, Membrane Lipids/analysis, *Phylogeny, Pigmentation, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Species Specificity, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |