General

@ref: 67770

BacDive-ID: 164225

keywords: 16S sequence, Bacteria, mesophilic

description: Deinococcus terrigena JCM 32248 is a mesophilic bacterium that was isolated from Soil sample collected in Gyeongsangnam-do Province.

NCBI tax id

• NCBI tax id: 2025511
• Matching level: species

strain history

• @ref: 67770
• history: H.-Y. Jung; Kyungpook Natl. Univ., South Korea; S13-1-2-1.

doi: 10.13145/bacdive164225.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deinococcota
• domain: Bacteria
• phylum: Deinococcota
• class: Deinococci
• order: Deinococcales
• family: Deinococcaceae
• genus: Deinococcus
• species: Deinococcus terrigena
• full scientific name: Deinococcus terrigena Ten et al. 2019

@ref: 67770

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus terrigena

full scientific name: Deinococcus terrigena Ten et al. 2019

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 25
• range: mesophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-8

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Soil sample collected in Gyeongsangnam-do Province
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_2273.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_1228;97_1455;98_1775;99_2273&stattab=map
• Last taxonomy: Deinococcus ficus subclade
• 16S sequence: LC315613
• Sequence Identity:
• Total samples: 1885
• soil counts: 240
• aquatic counts: 386
• animal counts: 1199
• plant counts: 60

Sequence information

16S sequences

• @ref: 67770
• description: Deinococcus terrigena S13-1-2-1 gene for 16S ribosomal RNA, partial sequence
• accession: LC315613
• length: 1436
• database: ena
• NCBI tax ID: 2025511

GC content

• @ref: 67770
• GC-content: 69.2
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 32248, KCTC 33939

literature

• topic: Phylogeny
• Pubmed-ID: 30238338
• title: Deinococcus terrigena sp. nov., a novel member of the family Deinococcaceae.
• authors: Ten LN, Cho H, Cho YJ, Jung HY
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-018-1167-9
• year: 2018
• mesh: Base Composition, Cell Wall/chemistry, Cytosol/chemistry, Deinococcus/*classification/genetics/*isolation & purification/physiology, Fatty Acids/analysis, Gamma Rays, Glycolipids/analysis, Hydrogen-Ion Concentration, Korea, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Soil Microbiology, Temperature, Vitamin K 2/analysis
• topic2: Enzymology

Reference