General

@ref: 67770

BacDive-ID: 164202

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Capnocytophaga endodontalis JCM 32133 is a mesophilic bacterium that was isolated from Refractory periapical abscess in the left mandibular second molar region of a human patient.

NCBI tax id

• NCBI tax id: 2708117
• Matching level: species

strain history

• @ref: 67770
• history: J.-K. Kook; KCOM, Chosun Univ., South Korea; ChDC OS43.

doi: 10.13145/bacdive164202.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Flavobacteriia
• order: Flavobacteriales
• family: Flavobacteriaceae
• genus: Capnocytophaga
• species: Capnocytophaga endodontalis
• full scientific name: Capnocytophaga endodontalis Jo et al. 2018

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Capnocytophaga

species: Capnocytophaga endodontalis

full scientific name: Capnocytophaga endodontalis Jo et al.

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Refractory periapical abscess in the left mandibular second molar region of a human patient
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_5324.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15818;96_615;97_3158;98_3968;99_5324&stattab=map
• Last taxonomy: Capnocytophaga endodontalis subclade
• 16S sequence: AF543293
• Sequence Identity:
• Total samples: 27651
• soil counts: 394
• aquatic counts: 467
• animal counts: 26648
• plant counts: 142

Sequence information

16S sequences

• @ref: 67770
• description: Capnocytophaga sp. ChDC OS43 16S ribosomal RNA gene, partial sequence
• accession: AF543293
• length: 1473
• database: ena
• NCBI tax ID: 209053

Genome sequences

• @ref: 67770
• description: Capnocytophaga endodontalis ChDC OS43
• accession: GCA_002209445
• assembly level: complete
• database: ncbi
• NCBI tax ID: 2708117

GC content

• @ref: 67770
• GC-content: 38.2
• method: genome sequence analysis

External links

@ref: 67770

culture collection no.: JCM 32133, KCCM 42841, KCOM 1579, KCTC 5562

literature

• topic: Phylogeny
• Pubmed-ID: 29181783
• title: Capnocytophaga endodontalis sp. nov., Isolated from a Human Refractory Periapical Abscess.
• authors: Jo E, Park SN, Lim YK, Paek J, Shin Y, Kim H, Kim SH, Shin JH, Chang YH, Kook JK
• journal: Curr Microbiol
• DOI: 10.1007/s00284-017-1397-5
• year: 2017
• mesh: Bacterial Typing Techniques, Base Composition, Capnocytophaga/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Gram-Negative Bacterial Infections/*microbiology, Humans, Periapical Abscess/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics
• topic2: Metabolism

Reference