Strain identifier
BacDive ID: 164185
Type strain: 
Species: Fluviibacter phosphoraccumulans
Strain history: K. Watanabe; Center for Environ. Sci. in Saitama, Japan; SHINM1.
NCBI tax ID(s): 1751046 (species)
General
@ref: 67770
BacDive-ID: 164185
keywords: genome sequence, 16S sequence, Bacteria
description: Fluviibacter phosphoraccumulans JCM 32071 is a bacterium that was isolated from Surface river water from the Koyama river.
NCBI tax id
- NCBI tax id: 1751046
- Matching level: species
strain history
- @ref: 67770
- history: K. Watanabe; Center for Environ. Sci. in Saitama, Japan; SHINM1.
doi: 10.13145/bacdive164185.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Fluviibacteraceae
- genus: Fluviibacter
- species: Fluviibacter phosphoraccumulans
- full scientific name: Fluviibacter phosphoraccumulans Watanabe et al. 2020
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhodocyclales
family: Fluviibacteraceae
genus: Fluviibacter
species: Fluviibacter phosphoraccumulans
full scientific name: Fluviibacter phosphoraccumulans Watanabe et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 27
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Surface river water from the Koyama river
- geographic location: Fukaya, Saitama
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_18102.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_9249;97_11122;98_13672;99_18102&stattab=map
- Last taxonomy: Fluviibacter phosphoraccumulans
- 16S sequence: LC094505
- Sequence Identity:
- Total samples: 21448
- soil counts: 1125
- aquatic counts: 16648
- animal counts: 3235
- plant counts: 440
Sequence information
16S sequences
- @ref: 67770
- description: Fluviibacter phosphoraccumulans SHINM1 gene for 16S ribosomal RNA, partial sequence
- accession: LC094505
- length: 1423
- database: nuccore
- NCBI tax ID: 1751046
Genome sequences
- @ref: 67770
- description: Fluviibacter phosphoraccumulans SHINM1
- accession: GCA_016110345
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1751046
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 54.3 | genome sequence analysis |
| 67770 | 56.7 | high performance liquid chromatography (HPLC) |
External links
@ref: 67770
culture collection no.: JCM 32071, NCIMB 15105
literature
- topic: Phylogeny
- Pubmed-ID: 32915122
- title: Fluviibacter phosphoraccumulans gen. nov., sp. nov., a polyphosphate-accumulating bacterium of Fluviibacteraceae fam. nov., isolated from surface river water.
- authors: Watanabe K, Morohoshi S, Kunihiro T, Ishii Y, Takayasu L, Ogata Y, Shindo C, Suda W
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004446
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Phospholipids/chemistry, *Phylogeny, Polyphosphates/chemistry, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |