Strain identifier

BacDive ID: 164180

Type strain: Yes

Species: Pseudomonas mangiferae

Strain history: TBRC 7080 <-- N. Srisuk; DMKU BBB3-04.

NCBI tax ID(s): 2593654 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67770

BacDive-ID: 164180

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Pseudomonas mangiferae JCM 32061 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Mango tree bark in Bangkachoa.

NCBI tax id

  • NCBI tax id: 2593654
  • Matching level: species

strain history

  • @ref: 67770
  • history: TBRC 7080 <-- N. Srisuk; DMKU BBB3-04.

doi: 10.13145/bacdive164180.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas mangiferae
  • full scientific name: Pseudomonas mangiferae Anurat et al. 2019

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas mangiferae

full scientific name: Pseudomonas mangiferae Anurat et al. 2019

type strain: yes

Morphology

cell morphology

  • @ref: 68216
  • gram stain: negative
  • cell length: 1.5 µm
  • cell width: 0.3 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: lophotrichous

colony morphology

  • @ref: 68216
  • colony size: 2 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 2 days

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth30mesophilic
68216positivegrowth12-40
68216positiveoptimum28-30mesophilic

culture pH

@refabilitytypepH
68216positivegrowth6-8
68216positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 68216
  • oxygen tolerance: aerobe

halophily

  • @ref: 68216
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 1-5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
68216739183-O-methyl-D-glucose+assimilation
6821630089acetate+assimilation
6821613705acetoacetate+assimilation
6821673706bromosuccinate+assimilation
6821616947citrate+assimilation
6821623652dextrin+assimilation
6821615824D-fructose+assimilation
6821678697D-fructose 6-phosphate+assimilation
6821628847D-fucose+assimilation
6821612936D-galactose+assimilation
6821618024D-galacturonic acid+assimilation
6821614314D-glucose 6-phosphate+assimilation
6821615748D-glucuronate+assimilation
68216D-lactic acid methyl ester+assimilation
6821616024D-mannose+assimilation
6821616523D-serine+assimilation
6821615740formate+assimilation
682165291gelatin+assimilation
6821628066gentiobiose+assimilation
6821632323glucuronamide+assimilation
6821617754glycerol+assimilation
6821670744glycyl-L-proline+assimilation
6821617596inosine+assimilation
6821616977L-alanine+assimilation
6821616467L-arginine+assimilation
6821629991L-aspartate+assimilation
6821618287L-fucose+assimilation
6821615895D-galactonic acid lactone+assimilation
6821629985L-glutamate+assimilation
6821615971L-histidine+assimilation
68216L-lactate+assimilation
6821615589L-malate+assimilation
6821618183L-pyroglutamic acid+assimilation
6821662345L-rhamnose+assimilation
6821617115L-serine+assimilation
6821651850methyl pyruvate+assimilation
6821635390galactarate+assimilation
6821617268myo-inositol+assimilation
68216506227N-acetyl-D-glucosamine+assimilation
6821617272propionate+assimilation
6821617992sucrose+assimilation
6821653423tween 40+assimilation
6821616865gamma-aminobutyric acid+assimilation
6821617925alpha-D-glucose+assimilation
6821664552alpha-hydroxybutyrate+assimilation
68216645522-hydroxybutyrate+assimilation
682168295beta-hydroxybutyrate+assimilation
6821618333D-arabitol-assimilation
6821629990D-aspartate-assimilation
6821617057cellobiose-assimilation
682168391D-gluconate-assimilation
6821615588D-malate-assimilation
6821617306maltose-assimilation
6821616899D-mannitol-assimilation
6821628053melibiose-assimilation
6821616634raffinose-assimilation
6821633801D-saccharate-assimilation
6821617814D-salicin-assimilation
6821617924D-sorbitol-assimilation
6821616551D-trehalose-assimilation
6821632528turanose-assimilation
6821635390galactarate-assimilation
68216n-acetyl-neuraminic acid-assimilation
6821663154N-acetyl-beta-D-mannosamine-assimilation
6821628037n-acetyl-D-galactosamine-assimilation
6821617309pectin-assimilation
68216181014-hydroxyphenylacetic acid-assimilation
6821617521(-)-quinic acid-assimilation
6821637657methyl D-glucoside-assimilation
6821617164stachyose-assimilation
6821636219alpha-lactose-assimilation

enzymes

@refvalueactivityec
68216cytochrome oxidase+1.9.3.1
68216catalase+1.11.1.6
68216acid phosphatase+3.1.3.2
68216alkaline phosphatase+3.1.3.1
68216esterase (C 4)+
68216esterase Lipase (C 8)+
68216leucine arylamidase+3.4.11.1
68216lipase (C 14)+
68216naphthol-AS-BI-phosphohydrolase+
68216valine arylamidase+
68216cystine arylamidase-3.4.11.3
68216N-acetyl-beta-glucosaminidase-3.2.1.52
68216trypsin-3.4.21.4
68216alpha-chymotrypsin-3.4.21.1
68216alpha-fucosidase-3.2.1.51
68216alpha-galactosidase-3.2.1.22
68216alpha-glucosidase-3.2.1.20
68216alpha-mannosidase-3.2.1.24
68216beta-glucosidase-3.2.1.21
68216beta-glucuronidase-3.2.1.31

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68216C10:0 3OH2.6
    68216C12:05.3
    68216C12:0 2OH2.4
    68216C12:0 3OH3.6
    68216C14:01.9
    68216C16:022.2
    68216C17:1 w8c2
    68216C16:1 w6c/C17:1 w7c19.4
    68216C18:1 w7c/C18:1 w6c35
  • type of FA analysis: whole cell analysis
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
67770Mango tree bark in BangkachoaSamutprakan ProvinceThailandTHAAsia
68216mango tree barkBangkachoa, Samutprakan ProvinceThailandTHAAsia13.6864100.566nutrient agar3 days30

Sequence information

16S sequences

  • @ref: 68216
  • description: Pseudomonas sp. strain BBB3-04 16S ribosomal RNA gene, partial sequence
  • accession: KY290607
  • length: 1444
  • database: ena
  • NCBI tax ID: 306

Genome sequences

  • @ref: 67770
  • description: Pseudomonas mangiferae DMKU BBB3-04
  • accession: GCA_007109405
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2593654

GC content

  • @ref: 68216
  • GC-content: 67.6
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.773yes
flagellatedyes82.162no
gram-positiveno98.796no
anaerobicno97.297yes
aerobicyes90.312yes
halophileno89.794no
spore-formingno94.016no
thermophileno99.596yes
glucose-utilyes87.492yes
glucose-fermentno89.345no

External links

@ref: 67770

culture collection no.: JCM 32061, TBRC 7080, DMKU BBB3-04

literature

  • topic: Phylogeny
  • Pubmed-ID: 31429815
  • title: Pseudomonas mangiferae sp. nov., isolated from bark of mango tree in Thailand.
  • authors: Anurat P, Duangmal K, Srisuk N
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003657
  • year: 2019
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Mangifera/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Bark/*microbiology, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68216Panjaporn Anurat, Kannika Duangmal and Nantana SrisukPseudomonas mangiferae sp. nov., isolated from bark of mango tree in Thailand10.1099/ijsem.0.003657IJSEM 69: 3537-3543 2019