Strain identifier
BacDive ID: 164127
Type strain: 
Species: Mesorhizobium composti
Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-YTH430.
NCBI tax ID(s): 2675109 (species)
General
@ref: 67770
BacDive-ID: 164127
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mesorhizobium composti JCM 31762 is a mesophilic bacterium that was isolated from Compost from a greenhouse located at National Chung Hsing University.
NCBI tax id
- NCBI tax id: 2675109
- Matching level: species
strain history
- @ref: 67770
- history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-YTH430.
doi: 10.13145/bacdive164127.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium composti
- full scientific name: Mesorhizobium composti Lin et al. 2020
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium composti
full scientific name: Mesorhizobium composti Lin et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q- 10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Compost from a greenhouse located at National Chung Hsing University
- geographic location: Taichung
- country: Taiwan
- origin.country: TWN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Mesorhizobium composti 16S ribosomal RNA gene, partial sequence
- accession: KX988315
- length: 1422
- database: ena
- NCBI tax ID: 2675109
Genome sequences
- @ref: 67770
- description: Mesorhizobium composti CC-YTH430
- accession: GCA_004801285
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2675109
GC content
- @ref: 67770
- GC-content: 61.8-62.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 79.491 | no |
| flagellated | no | 85.424 | no |
| gram-positive | no | 97.443 | no |
| anaerobic | no | 97.991 | no |
| aerobic | yes | 88.173 | no |
| halophile | no | 92.506 | no |
| spore-forming | no | 96.268 | no |
| glucose-util | yes | 90.238 | no |
| thermophile | no | 97.459 | yes |
| glucose-ferment | no | 90.721 | no |
External links
@ref: 67770
culture collection no.: JCM 31762, BCRC 81024
literature
- topic: Phylogeny
- Pubmed-ID: 31055717
- title: Mesorhizobium composti sp. nov., isolated from compost.
- authors: Lin SY, Hameed A, Hsieh YT, Young CC
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-019-01270-y
- year: 2019
- mesh: Bacterial Typing Techniques, Base Composition, Cluster Analysis, Composting, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Mesorhizobium/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Transmission, Nitrogen Fixation, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Taiwan
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |