Strain identifier
BacDive ID: 164105
Type strain:
Species: Virgibacillus pantothenticus
Strain history: C. Kato; JAMSTEC, Japan; 19R1-5.
NCBI tax ID(s): 1473 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164105
keywords: 16S sequence, Bacteria, thermophilic
description: Virgibacillus pantothenticus JCM 31627 is a thermophilic bacterium that was isolated from Deep subseafloor sediment off the Shimokita Peninsula .
NCBI tax id
- NCBI tax id: 1473
- Matching level: species
strain history
- @ref: 67770
- history: C. Kato; JAMSTEC, Japan; 19R1-5.
doi: 10.13145/bacdive164105.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Virgibacillus
- species: Virgibacillus pantothenticus
- full scientific name: Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998
synonyms
- @ref: 20215
- synonym: Bacillus pantothenticus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Virgibacillus
species: Virgibacillus pantothenticus
full scientific name: Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 45
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Deep subseafloor sediment off the Shimokita Peninsula (Drilling site C0020)
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_5264.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1861;97_2237;98_2743;99_5264&stattab=map
- Last taxonomy: Virgibacillus pantothenticus
- 16S sequence: LC155965
- Sequence Identity:
- Total samples: 140
- soil counts: 47
- aquatic counts: 21
- animal counts: 66
- plant counts: 6
Sequence information
16S sequences
- @ref: 67770
- description: Virgibacillus pantothenticus gene for 16S ribosomal RNA, partial sequence, strain: 19R1-5
- accession: LC155965
- length: 1487
- database: ena
- NCBI tax ID: 1473
External links
@ref: 67770
culture collection no.: JCM 31627
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |