General

@ref: 67770

BacDive-ID: 164073

keywords: 16S sequence, Bacteria

description: Flavobacterium panacis JCM 31468 is a bacterium that was isolated from Soil collected from the rhizosphere of ginseng .

NCBI tax id

• NCBI tax id: 2962567
• Matching level: species

strain history

• @ref: 67770
• history: D.-C. Yang and Y.-J. Kim; Ginseng Genet. Resour. Bank, Kyung Hee Univ., South Korea; DCY106.

doi: 10.13145/bacdive164073.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Flavobacteriia
• order: Flavobacteriales
• family: Flavobacteriaceae
• genus: Flavobacterium
• species: Flavobacterium panacis
• full scientific name: Flavobacterium panacis Kim et al. 2016

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium panacis

full scientific name: Flavobacterium panacis Kim et al.

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 25

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Soil collected from the rhizosphere of ginseng (Panax ginseng)
• host species: Panax ginseng
• geographic location: Gochang
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

Sequence information

16S sequences

• @ref: 67770
• description: Flavobacterium cutihirudinis strain DCY106 16S ribosomal RNA gene, partial sequence
• accession: KR338992
• length: 1497
• database: nuccore
• NCBI tax ID: 1265740

GC content

• @ref: 67770
• GC-content: 34.2
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 31468, KCTC 42747

literature

• topic: Phylogeny
• Pubmed-ID: 27357576
• title: Flavobacterium panacis sp. nov., isolated from rhizosphere of Panax ginseng.
• authors: Kim DH, Singh P, Farh Mel-A, Kim YJ, Nguyen NL, Lee HA, Yang DC
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-016-0720-7
• year: 2016
• mesh: Base Composition, Cell Wall/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacterium/*classification/genetics/*isolation & purification/physiology, Panax/*microbiology, Phosphatidylethanolamines/metabolism, Phosphatidylserines/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizosphere, Soil Microbiology, Species Specificity, Vitamin K 2/metabolism
• topic2: Metabolism

Reference