Strain identifier
BacDive ID: 163991
Type strain: 
Species: Anaerobutyricum hallii
Strain history: T. Lawley; Wellcome Trust Sanger Inst., UK; Sanger_119.
NCBI tax ID(s): 39488 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 163991
keywords: genome sequence, Bacteria, anaerobe
description: Anaerobutyricum hallii JCM 31263 is an anaerobe bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 39488
- Matching level: species
strain history
- @ref: 67770
- history: T. Lawley; Wellcome Trust Sanger Inst., UK; Sanger_119.
doi: 10.13145/bacdive163991.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Anaerobutyricum
- species: Anaerobutyricum hallii
- full scientific name: Anaerobutyricum hallii (Holdeman and Moore 1974) Shetty et al. 2018
synonyms
- @ref: 20215
- synonym: Eubacterium hallii
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Anaerobutyricum
species: Anaerobutyricum hallii
full scientific name: Anaerobutyricum hallii (Holdeman and Moore 1974) Shetty et al. 2018
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerobutyricum hallii strain JCM 31263 | 39488.234 | wgs | patric | 39488 |
| 66792 | Anaerobutyricum hallii JCM 31263 | GCA_016586395 | contig | ncbi | 39488 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 80.469 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.44 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 54.103 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.614 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.477 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 78.359 | no |
External links
@ref: 67770
culture collection no.: JCM 31263
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |