Strain identifier
BacDive ID: 163969
Type strain: 
Species: Thalassospira australica
Strain history: E. P. Ivanova; Swinburne Univ. of Technol., Australia; NP3b2.
NCBI tax ID(s): 1528106 (species)
General
@ref: 67770
BacDive-ID: 163969
keywords: genome sequence, Bacteria, Gram-negative
description: Thalassospira australica JCM 31222 is a Gram-negative bacterium that was isolated from Seawater sample collected at St. Kilda Beach.
NCBI tax id
- NCBI tax id: 1528106
- Matching level: species
strain history
- @ref: 67770
- history: E. P. Ivanova; Swinburne Univ. of Technol., Australia; NP3b2.
doi: 10.13145/bacdive163969.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Thalassospiraceae
- genus: Thalassospira
- species: Thalassospira australica
- full scientific name: Thalassospira australica Ivanova et al. 2016
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Thalassospiraceae
genus: Thalassospira
species: Thalassospira australica
full scientific name: Thalassospira australica Ivanova et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.5
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Seawater sample collected at St. Kilda Beach
- geographic location: Port Philip Bay, Victoria
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
Sequence information
Genome sequences
- @ref: 67770
- description: Thalassospira australica NP 3b2
- accession: GCA_000763295
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1528106
GC content
- @ref: 67770
- GC-content: 53.6
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.631 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 70.917 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.881 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.773 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 84.115 | no |
External links
@ref: 67770
culture collection no.: JCM 31222, KMM 6365
literature
- topic: Phylogeny
- Pubmed-ID: 27180097
- title: Thalassospira australica sp. nov. isolated from sea water.
- authors: Ivanova EP, Lopez-Perez M, Webb HK, Ng HJ, Dang TH, Zhukova NV, Mikhailov VV, Crawford RJ, Rodriguez-Valera F
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-016-0710-9
- year: 2016
- mesh: Australia, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/*isolation & purification/metabolism, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |