Strain identifier
BacDive ID: 163960
Type strain: 
Species: Halobacterium noricense
Strain history: S. W. Roh; Korea Basic Sci. Inst., South Korea; CBA1132.
NCBI tax ID(s): 223182 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163960
keywords: genome sequence, Archaea, mesophilic
description: Halobacterium noricense JCM 31150 is a mesophilic archaeon that was isolated from Solar salt in South Korea.
NCBI tax id
- NCBI tax id: 223182
- Matching level: species
strain history
- @ref: 67770
- history: S. W. Roh; Korea Basic Sci. Inst., South Korea; CBA1132.
doi: 10.13145/bacdive163960.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halobacterium
- species: Halobacterium noricense
- full scientific name: Halobacterium noricense Gruber et al. 2005
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halobacterium
species: Halobacterium noricense
full scientific name: Halobacterium noricense Gruber et al. 2005
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Solar salt in South Korea
Sequence information
Genome sequences
- @ref: 67770
- description: Halobacterium sp. CBA1132
- accession: GCA_001485535
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1765057
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.152 | no |
| gram-positive | no | 97.681 | no |
| anaerobic | no | 95.947 | no |
| aerobic | yes | 85.733 | no |
| halophile | yes | 90.056 | no |
| spore-forming | no | 95.387 | no |
| glucose-util | yes | 86.257 | no |
| motile | no | 76.532 | no |
| thermophile | no | 89.553 | yes |
| glucose-ferment | no | 76.402 | no |
External links
@ref: 67770
culture collection no.: JCM 31150, KCCM 43183
literature
- topic: Phylogeny
- Pubmed-ID: 27160574
- title: Genomic Analysis of the Extremely Halophilic Archaeon Halobacterium noricense CBA1132 Isolated from Solar Salt That Is an Essential Material for Fermented Foods.
- authors: Lim SK, Kim JY, Song HS, Kwon MS, Lee J, Oh YJ, Nam YD, Seo MJ, Lee DG, Choi JS, Yoon C, Sohn E, Rahman MA, Roh SW, Choi HJ
- journal: J Microbiol Biotechnol
- DOI: 10.4014/jmb.1603.03010
- year: 2016
- mesh: Base Composition, Base Sequence, Clustered Regularly Interspaced Short Palindromic Repeats, DNA, Archaeal/genetics, Fermentation, Genes, Archaeal, *Genome, Archaeal, Genomics, Halobacterium/*genetics/isolation & purification/physiology, Nitrogen/metabolism, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, *Sodium Chloride/metabolism
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |