Strain identifier

BacDive ID: 1639

Type strain: Yes

Species: Bartonella chomelii

Strain Designation: A828

Strain history: CIP <- 2003, M. Vayssier-Taussat, Vet. School, Maisons Alfort, France: strain A828

NCBI tax ID(s): 236402 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15702

BacDive-ID: 1639

DSM-Number: 21431

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, animal pathogen

description: Bartonella chomelii A828 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from ox, Bos taurus.

NCBI tax id

  • NCBI tax id: 236402
  • Matching level: species

strain history

@refhistory
15702<- CIP; A828 {2008} <- M. Vayssier-Taussat, Vet. School, Maisons Alfort, France
118254CIP <- 2003, M. Vayssier-Taussat, Vet. School, Maisons Alfort, France: strain A828

doi: 10.13145/bacdive1639.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella chomelii
  • full scientific name: Bartonella chomelii Maillard et al. 2004

@ref: 15702

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella chomelii

full scientific name: Bartonella chomelii Maillard et al. 2004

strain designation: A828

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
23145negative
69480negative99.983
118254negativerod-shapedno

colony morphology

@refcolony sizeincubation periodmedium used
231452-3 mm10 daysrabbit blood and sheep blood agar
577183-4 days
118254

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15702COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23145rabbit blood and sheep blood agaryes
33862MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
118254CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
15702positivegrowth37mesophilic
23145positivegrowth35mesophilic
33862positivegrowth37mesophilic
57718positivegrowth37mesophilic
118254positivegrowth37mesophilic
118254nogrowth10psychrophilic
118254nogrowth15psychrophilic
118254nogrowth25mesophilic
118254nogrowth30mesophilic
118254nogrowth41thermophilic
118254nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15702microaerophile
57718microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

@refsaltgrowthtested relationconcentration
118254NaClnogrowth0 %
118254NaClnogrowth2 %
118254NaClnogrowth4 %
118254NaClnogrowth6 %
118254NaClnogrowth8 %
118254NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2314516449alanine+other
2314529016arginine+other
2314515428glycine+other
2314525017leucine+other
2314525094lysine+other
2314528044phenylalanine+other
2314526271proline+other
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837162318D-lyxose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
1182544853esculin-hydrolysis
118254606565hippurate+hydrolysis
11825417632nitrate-reduction
11825416301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2314515688acetoinno
11825435581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
2314515688acetoin-
11825417234glucose-

enzymes

@refvalueactivityec
23145catalase-1.11.1.6
23145cytochrome oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
118254oxidase-
118254beta-galactosidase-3.2.1.23
118254alcohol dehydrogenase-1.1.1.1
118254gelatinase-
118254catalase-1.11.1.6
118254gamma-glutamyltransferase+2.3.2.2
118254lysine decarboxylase-4.1.1.18
118254ornithine decarboxylase-4.1.1.17
118254phenylalanine ammonia-lyase-4.3.1.24
118254tryptophan deaminase-
118254urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118254--++-+--+--+--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118254----+/----------------------------+/---+/----+/--+/-------+/-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling dateisolation date
15702ox, Bos taurusBos taurusLoire AtlantiqueFranceFRAEurope
23145blood of French domestic cows
57718Bovine,Bos taurusLoire AtlantiqueFranceFRAEurope2000
118254Animal, Ox, Bos taurusLoire AtlantiqueFranceFRAEurope2000

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Host#Mammals#Bovinae (Cow, Cattle)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3284.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_2519;99_3284&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: AY254309
  • Sequence Identity:
  • Total samples: 180
  • soil counts: 21
  • aquatic counts: 30
  • animal counts: 125
  • plant counts: 4

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15702yes, in single cases1Risk group (German classification)
1182542Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bartonella chomelii strain CIP 107869 16S-23S ribosomal RNA intergenic spacer, partial sequenceGQ464370187ena236402
15702Bartonella chomelii 16S ribosomal RNA gene, partial sequenceAY2543091375ena236402

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella chomelii DSM 21431GCA_014138465scaffoldncbi236402
66792Bartonella chomelii strain DSM 21431236402.3wgspatric236402
66792Bartonella chomelii DSM 214312829854532draftimg236402

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes51.392no
flagellatedno91.825no
gram-positiveno98.774no
anaerobicno96.715no
aerobicno96.847yes
halophileno67.701no
spore-formingno97.113no
glucose-utilno50no
thermophileno74.884no
glucose-fermentno73.306no

External links

@ref: 15702

culture collection no.: DSM 21431, CCUG 47497, CIP 107869

straininfo link

  • @ref: 71286
  • straininfo: 130834

literature

  • topic: Phylogeny
  • Pubmed-ID: 14742483
  • title: Bartonella chomelii sp. nov., isolated from French domestic cattle (Bos taurus).
  • authors: Maillard R, Riegel P, Barrat F, Bouillin C, Thibault D, Gandoin C, Halos L, Demanche C, Alliot A, Guillot J, Piemont Y, Boulouis HJ, Vayssier-Taussat M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02770-0
  • year: 2004
  • mesh: Animals, Bartonella/*classification/*genetics/isolation & purification, Base Sequence, Cattle/blood/*microbiology, Citrate (si)-Synthase/genetics, DNA Primers, France, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15702Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21431)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21431
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23145Renaud Maillard, Philippe Riegel, Francine Barrat, Corinne Bouillin, Danielle Thibault, Christelle Gandoin, Lénaig Halos, Christine Demanche, Annie Alliot, Jacques Guillot, Yves Piémont, Henri-Jean Boulouis, Muriel Vayssier-Taussat10.1099/ijs.0.02770-0Bartonella chomelii sp. nov., isolated from French domestic cattle (Bos taurus)IJSEM 54: 215-220 200414742483
33862Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5427
57718Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47497)https://www.ccug.se/strain?id=47497
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71286Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID130834.1StrainInfo: A central database for resolving microbial strain identifiers
118254Curators of the CIPCollection of Institut Pasteur (CIP 107869)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107869