General

@ref: 67770

BacDive-ID: 163899

keywords: 16S sequence, Archaea, mesophilic

description: Haloparvum sedimenti JCM 30892 is a mesophilic archaeon that was isolated from Rock salt of the Jiangcheng Salt Mine.

NCBI tax id

• NCBI tax id: 1678448
• Matching level: species

strain history

• @ref: 67770
• history: H. Xiang; Inst. of Microbiol., CAS, China; Y2.

doi: 10.13145/bacdive163899.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/archaea
• keyword: phylum/methanobacteriota
• domain: Archaea
• phylum: Methanobacteriota
• class: Halobacteria
• order: Haloferacales
• family: Haloferacaceae
• genus: Haloparvum
• species: Haloparvum sedimenti
• full scientific name: Haloparvum sedimenti Chen et al. 2016

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Haloferacaceae

genus: Haloparvum

species: Haloparvum sedimenti

full scientific name: Haloparvum sedimenti Chen et al. 2016

type strain: no

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Rock salt of the Jiangcheng Salt Mine
• geographic location: Yunnan Province
• country: China
• origin.country: CHN
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_189975.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18056;96_69732;97_90553;98_123071;99_189975&stattab=map
• Last taxonomy: Haloparvum
• 16S sequence: KP276581
• Sequence Identity:
• Total samples: 4
• aquatic counts: 4

Sequence information

16S sequences

• @ref: 67770
• description: Haloparvum sedimenti strain Y2 16S ribosomal RNA gene, partial sequence
• accession: KP276581
• length: 1456
• database: ena
• NCBI tax ID: 1678448

GC content

• @ref: 67770
• GC-content: 67
• method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 30892, CGMCC 1.15000

literature

• topic: Phylogeny
• Pubmed-ID: 27001607
• title: Haloparvum sedimenti gen. nov., sp. nov., a member of the family Haloferacaceae.
• authors: Chen S, Liu HC, Zhou J, Xiang H
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.001033
• year: 2016
• mesh: Base Composition, China, DNA, Archaeal/genetics, Genes, Archaeal, Glycolipids/chemistry, Halobacteriaceae/*classification/genetics/isolation & purification, Mining, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride
• topic2: Transcriptome

Reference