Strain identifier
BacDive ID: 163894
Type strain: 
Species: Mangrovimonas xylaniphaga
Strain history: G. Furusawa; Centre for Chem. Biol., Univ. Sains Malaysia, Malaysia; ST2L12.
NCBI tax ID(s): 1645915 (species)
General
@ref: 67770
BacDive-ID: 163894
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mangrovimonas xylaniphaga JCM 30880 is a mesophilic bacterium that was isolated from Estuarine mangrove sediment from Matang Mangrove Forest.
NCBI tax id
- NCBI tax id: 1645915
- Matching level: species
strain history
- @ref: 67770
- history: G. Furusawa; Centre for Chem. Biol., Univ. Sains Malaysia, Malaysia; ST2L12.
doi: 10.13145/bacdive163894.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Mangrovimonas
- species: Mangrovimonas xylaniphaga
- full scientific name: Mangrovimonas xylaniphaga Dinesh et al. 2017
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Mangrovimonas
species: Mangrovimonas xylaniphaga
full scientific name: Mangrovimonas xylaniphaga Dinesh et al.
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Estuarine mangrove sediment from Matang Mangrove Forest
- geographic location: Perak
- country: Malaysia
- origin.country: MYS
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_2803.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_1490;97_1778;98_2173;99_2803&stattab=map
- Last taxonomy: Mangrovimonas xylaniphaga subclade
- 16S sequence: KR780982
- Sequence Identity:
- Total samples: 252
- soil counts: 17
- aquatic counts: 188
- animal counts: 46
- plant counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Mangrovimonas xylaniphaga strain ST2L12 16S ribosomal RNA gene, complete sequence
- accession: KR780982
- length: 1519
- database: ena
- NCBI tax ID: 1645915
Genome sequences
- @ref: 67770
- description: Mangrovimonas xylaniphaga ST2L12
- accession: GCA_001280435
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1645915
GC content
- @ref: 67770
- GC-content: 38.31
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 87.907 | no |
| flagellated | no | 95.116 | no |
| gram-positive | no | 97.693 | no |
| anaerobic | no | 99.278 | no |
| halophile | no | 79.358 | no |
| spore-forming | no | 96.687 | no |
| thermophile | no | 98.07 | no |
| glucose-util | yes | 88.13 | no |
| aerobic | yes | 85.367 | no |
| glucose-ferment | no | 87.34 | no |
External links
@ref: 67770
culture collection no.: JCM 30880, LMG 28914
literature
- topic: Phylogeny
- Pubmed-ID: 27506901
- title: Mangrovimonas xylaniphaga sp. nov. isolated from estuarine mangrove sediment of Matang Mangrove Forest, Malaysia.
- authors: Dinesh B, Furusawa G, Amirul AA
- journal: Arch Microbiol
- DOI: 10.1007/s00203-016-1275-8
- year: 2016
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Geologic Sediments/chemistry/*microbiology, Malaysia, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wetlands
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |